Glyma18g06650 - SoyBase

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Report for Sequence Feature Glyma18g06650

Feature Type:	gene_model
Chromosome:	Gm18
Start:	5249000
stop:	5252691
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g06650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15240	AT	Annotation by Michelle Graham. TAIR10: Transmembrane amino acid transporter family protein \| chr5:4947762-4950211 FORWARD LENGTH=423	SoyBase	E_val: 3.00E-156	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0015171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity	SoyBase	N/A	ISS
KOG1303	KOG	Amino acid transporters	JGI		ISS
PTHR22950	Panther	AMINO ACID TRANSPORTER	JGI		ISS
PTHR22950:SF9	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01490	PFAM	Transmembrane amino acid transporter protein	JGI		ISS
UniRef100_B9IJY3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Amino acid transporter (Fragment) n=1 Tax=Populus trichocarpa RepID=B9IJY3_POPTR	SoyBase	E_val: 4.00E-168	ISS
UniRef100_I1MZW6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MZW6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g06650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g06650

Paralog	Evidence	Comments
Glyma11g29080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g06650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g059300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g06650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g06650

Limit To All Plant Sequences

>Glyma18g06650.1   sequence type=CDS   gene model=Glyma18g06650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTATGGCTGGTGAGCAAGGTGATAGATGTTCCTCCATCACCATACCCCTTTTGGATGATGAAAAAGTGCACCAAGTGAATGGTTCAGAAGAGGCTTTGGTGGCCAAAACTTGTGATCTACACACAGCTCATGTGGGTAACACCTCCTTTTTCAAGACCTGCTTCCATCTAATTAATGCCCTCTCAGGAGTTGGTATTATTTCCATGCCTTATGCACTGGCATCTGGGGGATGGTTAAGCATATCACTACTATTTGTGATTGCCATTGCTTGCTGTTATACTGGTATGTTGGTCAAAAGATGCATGGATATGGACCCTGACATCAAGAATTTTCCTGACATAGGTCAACGTGCATTTGGAGACAAGGGGAGGATAATAGTATCAATTGCCATGAATTCTGAGCTCTTCCTAGTTGTAACAGGTTTTCTGATTTTAGAGGGTGATAATCTCAACAAACTAGTACCAAACATGCAACTTGAACTTGCAGGGTTAACAATTGGTGGTACAACAATTTTTACCATGATTGCTGCCCTTGTTATTTTGCCTAGTGTTTTGTTAGAGGATTTGAGCATGCTGTCTTATGTCTCTGCTAGTGGGGCTTTGGCTTCTTCAATCTTCCTCCTCTCTATATTTTGGAATGGAACCATTGATGGCACTGGATTTCATGCAAAGGGAACAATTTTCAGATTGAGTGGAATACCTTCTGCTGTCAGCTTATATGCCTTCTGCTATAGTGCTCATCCTATCCTTCCCACTCTCTACAATTCTATGAGAGACAAAAGTCAGTTCTCTAGGGTTCTGTCTATATGCTTTTCAGTATGCACCCTTGGTTATGCAGCAGCAGGTGTTTTGGGCTACTTAATGTTTGGACAAGAGGTTGAATCACAAGTGACTTTGAACCTCCCAACAGGCAAGTTCAGTTCACATGTAGCAATATTCACTACCTTGGTCAATCCTATAACCAAATATGCATTGATGCTTACCCCAGTCATTTATGCTGTAAAAAACAAGGTTTCATGGCATTACAACAAAAGGTCTACACATATGTTTGTTAGTACTTCCATGCTCATTAGCACTCTTATTGTAGCCGTGGCCATTCCCTTGTTTGGATATCTCATGTCACTCATTGGGGCATTGCTAAGTGTCTCAGCTTCAATTTTAGTGCCATCAGTGTGCTACTTGAAGATCTCAGGAGCTTACAAGAGATTTGGGTCTGAAATGATCATCAACTATTCAATAATAATAATGGGGGTCACTATTGCTGTAGTGGGTACTTATACATCTCTTGTAGATATAGTTCATAATTTGTAA

Predicted protein sequences of Glyma18g06650

Limit To All Plant Sequences

>Glyma18g06650.1   sequence type=predicted peptide   gene model=Glyma18g06650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMAGEQGDRCSSITIPLLDDEKVHQVNGSEEALVAKTCDLHTAHVGNTSFFKTCFHLINALSGVGIISMPYALASGGWLSISLLFVIAIACCYTGMLVKRCMDMDPDIKNFPDIGQRAFGDKGRIIVSIAMNSELFLVVTGFLILEGDNLNKLVPNMQLELAGLTIGGTTIFTMIAALVILPSVLLEDLSMLSYVSASGALASSIFLLSIFWNGTIDGTGFHAKGTIFRLSGIPSAVSLYAFCYSAHPILPTLYNSMRDKSQFSRVLSICFSVCTLGYAAAGVLGYLMFGQEVESQVTLNLPTGKFSSHVAIFTTLVNPITKYALMLTPVIYAVKNKVSWHYNKRSTHMFVSTSMLISTLIVAVAIPLFGYLMSLIGALLSVSASILVPSVCYLKISGAYKRFGSEMIINYSIIIMGVTIAVVGTYTSLVDIVHNL*

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