SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G30105 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G07910.1). | chr2:12849855-12851908 FORWARD LENGTH=367 | SoyBase | E_val: 2.00E-158 | ISS |
| KOG0005 | KOG | Ubiquitin-like protein | JGI | ISS | |
| PTHR23155 | Panther | LEUCINE-RICH REPEAT-CONTAINING PROTEIN | JGI | ISS | |
| PF00240 | PFAM | Ubiquitin family | JGI | ISS | |
| PF00560 | PFAM | Leucine Rich Repeat | JGI | ISS | |
| UniRef100_D7LBJ7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LBJ7_ARALL | SoyBase | E_val: 6.00E-146 | ISS |
| UniRef100_UPI000233E9E7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E9E7 related cluster n=1 Tax=unknown RepID=UPI000233E9E7 | SoyBase | E_val: 0 | ISS |
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Glyma18g06630 not represented in the dataset |
Glyma18g06630 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g29287 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g059000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g06630.2 sequence type=transcript gene model=Glyma18g06630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTCAGAATCTATTTTAGAATCCTTCGAAATCGAACACAAGATATAAGATCGTGTGTAAAATTGTGATGTTCTTCCTTTCCTAGTAAATGGTATTGGCCTTTCTCCTGCGACGCACTCATAACAGGATTCGCATCAATAGAAAAAGTTGAAATGGAAGCAAATAGTGGAGCAAGCGAACCCAATTCGAATGCAACCATAACCATAAACGTGAAGTTCAGTGGCGTCTCTATACCCATCTCAATCTCACCCAACTCAACCATCAAAGACCTCAAGTCCCTTCTTTTACCTTCCACCAATGTCCTCCCTCGTGGCCAAAAACTCATCTTCAAAGGAAAGGTTTTGGAAGACCCCATGACTTTGACTGCATCCAAATTGACTAATGGATCCAAACTCATGCTTGTGGCTTCCCAATGTTTATATCAAGGGGATGGTCCTGTCTTGAAGAAAGCTCAGGTTGTTCCCAAATCGAGGAAAGATGGTCACTCAGGCTCTAGCAACGACATGAAGAAAATTCCTGTTAAGAACCGGATGGAACGGTGGAAAGCAACAGGAGTTGTGGCATTGTCTGAATGCAACTTGGAGGCCATACCTGATGAAGTGTGGGTTTGTGGATCTTCTGCAAGAGTTCTAGATTGCAACAAAAATTCAATTAAAAATATCCCCAACGAAATTGCGCGTCTTACCAGTCTAGAGAAACTATTCATCAATGCAAATGAGATAGTGGATGAATCAATTAGGTGGGAAGGACTAACAACTCTGAAGTACCTAACTGTATTATCATTGAACCATAACAATTTAACTACTTTGTCGTCTGCTCTTGGATCTCTTACCTCCTTAAGGGAGCTGCATGTTTCCAATAATAAATTGAGTGGCCTTCCTAATGAAATAGGGCATCTGACACAATTAGAAGTTTTGCGAGCCAACAATAATAGGATAAGTATCGTTAGTGACTCTACTGGGAATTGCCACTCTCTTGTTGAGGTTGATTTCTCCTCAAATTTTCTGTCAGAATTGCCAGAGACATTTAGTAGTTTGAGCAATTTGAAGGCATTGTATCTTGGTAACAATGGGATGAAATCTCTTCCATCTAAGCTATTCAAGACTTGTCTTCAACTCTCCACATTGGATCTCCACAATACAGAAATAACAATTGATCTCCTTCGCCAGTTTGAAGGGTGGGACAATTTTGACGAGCGCCGGCGCTCAAAGCATCAAAAACAAATTGATTTCCGGGTTGGAGTTTCTAGAGATTTTGATGAAGGTGCTGATAAAAACTAATAGAAATGATTTGTTATAAGCAATGCAGTTCAGATAGTCTTCATTAAGTTCATGTCCAAACTTGATGGCAATTGCTTATCTTAACCCTCTGGTGGCAAAATGCAAATAGGAAATTTGTGATAGGGTTGTTGTTTTATTGAGATTTTCTATAAGTGACTAATAAATACTAAAAAATGTTTGAGTACCCCTTAAAAGTTGTATTATTATTATTTTTTAATTAGGAATAGTGTCTCATTCTTTCAGCTATTACATGCCCTGTGTCTGTGGTAGGTATGATAAGGATGTTGCAGGTATTTTGGCTTTCAATCCATGGATATGATGTCTGGTGTGAAGGTTGGCATCTCAAAATATAGCTA
>Glyma18g06630.1 sequence type=CDS gene model=Glyma18g06630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGCAAATAGTGGAGCAAGCGAACCCAATTCGAATGCAACCATAACCATAAACGTGAAGTTCAGTGGCGTCTCTATACCCATCTCAATCTCACCCAACTCAACCATCAAAGACCTCAAGTCCCTTCTTTTACCTTCCACCAATGTCCTCCCTCGTGGCCAAAAACTCATCTTCAAAGGAAAGGTTTTGGAAGACCCCATGACTTTGACTGCATCCAAATTGACTAATGGATCCAAACTCATGCTTGTGGCTTCCCAATGTTTATATCAAGGGGATGGTCCTGTCTTGAAGAAAGCTCAGGTTGTTCCCAAATCGAGGAAAGATGGTCACTCAGGCTCTAGCAACGACATGAAGAAAATTCCTGTTAAGAACCGGATGGAACGGTGGAAAGCAACAGGAGTTGTGGCATTGTCTGAATGCAACTTGGAGGCCATACCTGATGAAGTGTGGGTTTGTGGATCTTCTGCAAGAGTTCTAGATTGCAACAAAAATTCAATTAAAAATATCCCCAACGAAATTGCGCGTCTTACCAGTCTAGAGAAACTATTCATCAATGCAAATGAGATAGTGGATGAATCAATTAGGTGGGAAGGACTAACAACTCTGAAGTACCTAACTGTATTATCATTGAACCATAACAATTTAACTACTTTGTCGTCTGCTCTTGGATCTCTTACCTCCTTAAGGGAGCTGCATGTTTCCAATAATAAATTGAGTGGCCTTCCTAATGAAATAGGGCATCTGACACAATTAGAAGTTTTGCGAGCCAACAATAATAGGTATTATTTAAACCTCTGTACTTGA >Glyma18g06630.2 sequence type=CDS gene model=Glyma18g06630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGCAAATAGTGGAGCAAGCGAACCCAATTCGAATGCAACCATAACCATAAACGTGAAGTTCAGTGGCGTCTCTATACCCATCTCAATCTCACCCAACTCAACCATCAAAGACCTCAAGTCCCTTCTTTTACCTTCCACCAATGTCCTCCCTCGTGGCCAAAAACTCATCTTCAAAGGAAAGGTTTTGGAAGACCCCATGACTTTGACTGCATCCAAATTGACTAATGGATCCAAACTCATGCTTGTGGCTTCCCAATGTTTATATCAAGGGGATGGTCCTGTCTTGAAGAAAGCTCAGGTTGTTCCCAAATCGAGGAAAGATGGTCACTCAGGCTCTAGCAACGACATGAAGAAAATTCCTGTTAAGAACCGGATGGAACGGTGGAAAGCAACAGGAGTTGTGGCATTGTCTGAATGCAACTTGGAGGCCATACCTGATGAAGTGTGGGTTTGTGGATCTTCTGCAAGAGTTCTAGATTGCAACAAAAATTCAATTAAAAATATCCCCAACGAAATTGCGCGTCTTACCAGTCTAGAGAAACTATTCATCAATGCAAATGAGATAGTGGATGAATCAATTAGGTGGGAAGGACTAACAACTCTGAAGTACCTAACTGTATTATCATTGAACCATAACAATTTAACTACTTTGTCGTCTGCTCTTGGATCTCTTACCTCCTTAAGGGAGCTGCATGTTTCCAATAATAAATTGAGTGGCCTTCCTAATGAAATAGGGCATCTGACACAATTAGAAGTTTTGCGAGCCAACAATAATAGGATAAGTATCGTTAGTGACTCTACTGGGAATTGCCACTCTCTTGTTGAGGTTGATTTCTCCTCAAATTTTCTGTCAGAATTGCCAGAGACATTTAGTAGTTTGAGCAATTTGAAGGCATTGTATCTTGGTAACAATGGGATGAAATCTCTTCCATCTAAGCTATTCAAGACTTGTCTTCAACTCTCCACATTGGATCTCCACAATACAGAAATAACAATTGATCTCCTTCGCCAGTTTGAAGGGTGGGACAATTTTGACGAGCGCCGGCGCTCAAAGCATCAAAAACAAATTGATTTCCGGGTTGGAGTTTCTAGAGATTTTGATGAAGGTGCTGATAAAAACTAA
>Glyma18g06630.1 sequence type=predicted peptide gene model=Glyma18g06630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEANSGASEPNSNATITINVKFSGVSIPISISPNSTIKDLKSLLLPSTNVLPRGQKLIFKGKVLEDPMTLTASKLTNGSKLMLVASQCLYQGDGPVLKKAQVVPKSRKDGHSGSSNDMKKIPVKNRMERWKATGVVALSECNLEAIPDEVWVCGSSARVLDCNKNSIKNIPNEIARLTSLEKLFINANEIVDESIRWEGLTTLKYLTVLSLNHNNLTTLSSALGSLTSLRELHVSNNKLSGLPNEIGHLTQLEVLRANNNRYYLNLCT* >Glyma18g06630.2 sequence type=predicted peptide gene model=Glyma18g06630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEANSGASEPNSNATITINVKFSGVSIPISISPNSTIKDLKSLLLPSTNVLPRGQKLIFKGKVLEDPMTLTASKLTNGSKLMLVASQCLYQGDGPVLKKAQVVPKSRKDGHSGSSNDMKKIPVKNRMERWKATGVVALSECNLEAIPDEVWVCGSSARVLDCNKNSIKNIPNEIARLTSLEKLFINANEIVDESIRWEGLTTLKYLTVLSLNHNNLTTLSSALGSLTSLRELHVSNNKLSGLPNEIGHLTQLEVLRANNNRISIVSDSTGNCHSLVEVDFSSNFLSELPETFSSLSNLKALYLGNNGMKSLPSKLFKTCLQLSTLDLHNTEITIDLLRQFEGWDNFDERRRSKHQKQIDFRVGVSRDFDEGADKN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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