Glyma18g06610 - SoyBase

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Report for Sequence Feature Glyma18g06610

Feature Type:	gene_model
Chromosome:	Gm18
Start:	5184428
stop:	5188957
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g06610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G58520	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr5:23655312-23657943 FORWARD LENGTH=604	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004712	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine/tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0192	KOG	Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs	JGI		ISS
PTHR23257	Panther	SERINE-THREONINE PROTEIN KINASE	JGI		ISS
PTHR23257:SF25	Panther	PROTEIN KINASE	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_B9SKV0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase, putative n=1 Tax=Ricinus communis RepID=B9SKV0_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MZW2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MZW2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g06610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g06610

Paralog	Evidence	Comments
Glyma11g29310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g06610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g058800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g06610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g06610

Limit To All Plant Sequences

>Glyma18g06610.1   sequence type=CDS   gene model=Glyma18g06610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCAGCGTTGGAGTGCTGGTCGCGCCGCGCCACCACCACCGTCCACGAGGACCACGCGCTTCTCATGCAGCGACCCGAACAGGACACAACACCCAGAGACTCTTCTTCATCTTCTTCTTCTTCCCTCGTCCACAAGAAGCTTCAAAAACTCACGCGCAACGTCTCCGAAGCCATTGCTTCCCTCAAAAACTCCCTCAACAGCACCATCAACGTCGAATCCTCCAAACTCGACGGGCCTCGCAGCCTCGTGTGGACCACCGTCCTCCGCAACCTCACGCACCTCTACCCCGGTTCCCAGCTCCCGGAGAAGTTAGTCTGCAACATTCGCAAGCACTACGATTCCTTGCCTCTCAGTTATTCTCAGGCGGGGTTTGATGTGAAGGATGTGTTTCTTCACATGAAGCTGATGGAGCAAGCTTTAGAGGACGAGCAGGCTGCTATTTTGATTCAAGAGGAGTGTGATGGTGAGATCCAGCTTCAGGGGTCTGTGTTCAAGTTAACATTTGCTTGCAACTCCCCAATTTCGTGGCCTTTGATGTCGGGTGCGTTGGATGGTTACTCCATTTGCTGCAAGAAGATTCAGATCTTTGAGAAGAAAGGTTTCACCCTTGGGATTGTGCTGCTTCTTGTTCTTTCTGGGGGTGGCCAAGATAAGTTGGTCAGGACCCGGGTTGAAAGCGCTCTCAAGATTGCCATGAAGAGGCTGAAAACCGGTGGCGTGAAGCTGCCCTTTGGGCTTTGTGGATGTCAAGAGGAGAACTCCAAGGGGAGAGGACTTGGAGAGATTGAAGAAGATGGAGGGGATGCATATTGTGGAAATGGATTTGAGAATTTAAGCCAAAATATTCAGCTTCGTGTGCCATTGCCTAGTTCATCTTTTCTTGTAGTCATAGATGAGTGGCAGACTATTCAATCCGGTGGGGATGAGATTGAAAAATGGTTGTTGAACTCAGATAGTCTTGAGTTTGTAGAACAGATTGCGCCCAATTCGTATAAGGGGACGTACATGGGGAAAAGGGTTGGCATTGAGAAGCTTAGAGGGTGTGAGAAAGGGAACTCTTATGAGTTTGAGCTCAGGAAAGATCTGCTGGCACTGATGACTTGTGGGCATAGAAATATTATGCAGTTTTGTGGTGTTTGTGTAGATGACAACCATGGGTTATGTGCAGTGACAAAATTTGTTGAAGGTGGATCTGTTCATGACTTAATGTTAAAGAACAAGAAGCTTTCGAGTAAGGATGTTGTAAGAATTGCAGCTGATGTAGCTGAGGGGATCAAGTTTATGAATGATCACGGTGTTGCATACGGAGATCTTAATACGCAGAGGATTCTGTTGGATAAGCATGGGAATGCTTGCTTGGGTGATATGGGCATTGTCACTGCCTGCAAGAGTGTCAGAGAGGCAATAGATTATGAAACTGATGGTTATCGATGGCTCGCACCAGAGATAATTGCTGGTGATCCAGAGAGTGTGACAGAGACATGGATGAGTAATGTTTATAGTTTTGGCATGGTAATTTGGGAGATGGTAACCGGTGAGGCAGCATATTCTGCATTTTCACCAGTTCAAGCAGCAGTTGGCATTGCTGCTTGTGGCCTAAGACCTGAAATCCCCAAGGACTGCCCTCAAACTCTAAAGTCTCTCATGACAAAGTGTTGGAACAACACCCCTTCAAAACGCCCCCATTTTTCTGAAATTTTGGCCATATTGCTACGACCAAGCAACTACAATAGGTAA

Predicted protein sequences of Glyma18g06610

Limit To All Plant Sequences

>Glyma18g06610.1   sequence type=predicted peptide   gene model=Glyma18g06610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAALECWSRRATTTVHEDHALLMQRPEQDTTPRDSSSSSSSSLVHKKLQKLTRNVSEAIASLKNSLNSTINVESSKLDGPRSLVWTTVLRNLTHLYPGSQLPEKLVCNIRKHYDSLPLSYSQAGFDVKDVFLHMKLMEQALEDEQAAILIQEECDGEIQLQGSVFKLTFACNSPISWPLMSGALDGYSICCKKIQIFEKKGFTLGIVLLLVLSGGGQDKLVRTRVESALKIAMKRLKTGGVKLPFGLCGCQEENSKGRGLGEIEEDGGDAYCGNGFENLSQNIQLRVPLPSSSFLVVIDEWQTIQSGGDEIEKWLLNSDSLEFVEQIAPNSYKGTYMGKRVGIEKLRGCEKGNSYEFELRKDLLALMTCGHRNIMQFCGVCVDDNHGLCAVTKFVEGGSVHDLMLKNKKLSSKDVVRIAADVAEGIKFMNDHGVAYGDLNTQRILLDKHGNACLGDMGIVTACKSVREAIDYETDGYRWLAPEIIAGDPESVTETWMSNVYSFGMVIWEMVTGEAAYSAFSPVQAAVGIAACGLRPEIPKDCPQTLKSLMTKCWNNTPSKRPHFSEILAILLRPSNYNR*

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