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Report for Sequence Feature Glyma18g06576
Feature Type: gene_model
Chromosome: Gm18
Start: 5122368
stop: 5126645
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g06576
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G15080 AT
Annotation by Michelle Graham. TAIR10: lipid phosphate phosphatase 2 | chr1:5188080-5189476 FORWARD LENGTH=290
SoyBase E_val: 2.00E-122 ISS
GO:0009738 GO-bp
Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0005887 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0003993 GO-mf
Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity
SoyBase N/A ISS
GO:0008195 GO-mf
Annotation by Michelle Graham. GO Molecular Function: phosphatidate phosphatase activity
SoyBase N/A ISS
KOG3030
KOG
Lipid phosphate phosphatase and related enzymes of the PAP2 family
JGI ISS
PTHR10165 Panther
LIPID PHOSPHATE PHOSPHATASE-RELATED
JGI ISS
PTHR10165:SF45 Panther
PHOSPHATIDATE PHOSPHATASE
JGI ISS
PF01569 PFAM
PAP2 superfamily
JGI ISS
UniRef100_G7J0R9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Lipid phosphate phosphatase n=1 Tax=Medicago truncatula RepID=G7J0R9_MEDTR
SoyBase E_val: 6.00E-169 ISS
UniRef100_G7J0R9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Lipid phosphate phosphatase n=1 Tax=Medicago truncatula RepID=G7J0R9_MEDTR
SoyBase E_val: 6.00E-169 ISS
Expression Patterns of Glyma18g06576
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma18g06576
Paralog Evidence Comments
Glyma11g29391 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g06576 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g058400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g06576
Transcripts of Glyma18g06576
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g06576.2 sequence type=transcript gene model=Glyma18g06576 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GTGCAGTCTAAAAAATGCACGTCCCTGCCTTTCTCTATCTCTTTCTCCAAACATTTGTTTAAAGCTAAAGCCTTACTTGGGAGAAAAAAAAAATGGTTTTTCAATCTACAGGAAGCAAGTTGGCACTAAGTCATATGCATGATTGGCTGATTCTTCTGCTTCTTGCTGCTATGGATGGAGCCTTGAACATGATAGAACCATTCCATCGCTACATCGGGAAAGACATGATGAGAGACCTTATGTTCCCATTCAAAGAAGATACCATACCCATGTGGGGTGTCCCTATCCTCTCTATTTTCATCCCCATTCTTATCTTTATTGCGTTTTACTTTGCCAGAAGGGATGTCTATGATTTACACCATGCAACATTGGGTCTCATGTTTTCAAGCTTAATCACTGGAGTCATCACTGATTCCATTAAAGATGCTGTTGGTAGACCGCGACCAAACTTCTTCCACCGGTGTTTCCCTGACAATATACCTGTGTTTGATAAAGACAATGGTGATGTTCTTTGTACTGGGATTAAGGCAGTTATAAAGGAAGGATACAAAAGCTTTCCAAGTGGGCATACTTCATGGTCCTTTGCTGGTCTTGGTTTCCTTTCATGGTACTTATCAGGGAAAGTTAGAGTGTTTGATCGCAGGGGGCATATTGGGAAACTATGCCTAGTCTTGCTTCCTTTACTTATTGCTGCTCTTGTGGGAATTACTCGAGTTGATGATTACTGGCATCATTGGACTGATGTGTTTGCTGGAGGCCTTATAGGACTTACCGTGTCTTCAATCTGCTATTTGCTACTCTTTCCTTTGCCTACTCATCCACATGGTTGGGCTCCTCATGCTTTTTTTCTTATGATGAGAGAGAGTGATTCTCCTTCCCAACGAGGAAGCCAAACTCCAGATACAACAAGACTAGATGAGTTTCCCCTGCAAATGGCGGAAATGGAAAGTGGGACAAGATATATGTGAATGTGTGATTGCTGATTTCTGTTATGCTATATGCTTCTTTGACGAAATGGATTATAGGCAGTTTAGAAACATTTGGCAGTGTTGTGTCCATGTATACATCTCTAATAGGTACCTTGCAAGATTGCAGTTTCCTTAGGTCGAACTAAGAATTAATATTCTCCAAAGTAGTGAAATT
Coding sequences of Glyma18g06576
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g06576.1 sequence type=CDS gene model=Glyma18g06576 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTTTTTCAATCTACAGGAAGCAAGTTGGCACTAAGTCATATGCATGATTGGCTGATTCTTCTGCTTCTTGCTGCTATGGATGGAGCCTTGAACATGATAGAACCATTCCATCGCTACATCGGGAAAGACATGATGAGAGACCTTATGTTCCCATTCAAAGAAGATACCATACCCATGTGGGGTGTCCCTATCCTCTCTATTTTCATCCCCATTCTTATCTTTATTGCGTTTTACTTTGCCAGAAGGGATGTCTATGATTTACACCATGCAACATTGGGTCTCATGTTTTCAAGCTTAATCACTGGAGTCATCACTGATTCCATTAAAGATGCTGTTGGTAGACCGCGACCAAACTTCTTCCACCGGTGTTTCCCTGACAATATACCTGTGTTTGATAAAGACAATGGTGATGTTCTTTGTACTGGGATTAAGGCAGTTATAAAGGAAGGATACAAAAGCTTTCCAAGTGGGCATACTTCATGGTCCTTTGCTGGTCTTGGTTTCCTTTCATGGTACTTATCAGGGAAAGTTAGAGTGTTTGATCGCAGGGGGCATATTGGGAAACTATGCCTAGTCTTGCTTCCTTTACTTATTGCTGCTCTTGTGGGAATTACTCGAGTTGATGATTACTGGCATCATTGGACTGATGTGTTTGCTGGAGGCCTTATAGGACTTACCGTGTCTTCAATCTGCTATTTGCTACTCTTTCCTTTGCCTACTCATCCACATGGTTGGGCTCCTCATGCTTTTTTTCTTATGATGAGAGAGAGTGATTCTCCTTCCCAACGAGGAAGCCAAACTCCAGATACAACAAGACTAGATGAGTTTCCCCTGCAAATGGCGGAAATGGAAAGTGGGACAAGATATATGTGA
>Glyma18g06576.2 sequence type=CDS gene model=Glyma18g06576 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTTTTTCAATCTACAGGAAGCAAGTTGGCACTAAGTCATATGCATGATTGGCTGATTCTTCTGCTTCTTGCTGCTATGGATGGAGCCTTGAACATGATAGAACCATTCCATCGCTACATCGGGAAAGACATGATGAGAGACCTTATGTTCCCATTCAAAGAAGATACCATACCCATGTGGGGTGTCCCTATCCTCTCTATTTTCATCCCCATTCTTATCTTTATTGCGTTTTACTTTGCCAGAAGGGATGTCTATGATTTACACCATGCAACATTGGGTCTCATGTTTTCAAGCTTAATCACTGGAGTCATCACTGATTCCATTAAAGATGCTGTTGGTAGACCGCGACCAAACTTCTTCCACCGGTGTTTCCCTGACAATATACCTGTGTTTGATAAAGACAATGGTGATGTTCTTTGTACTGGGATTAAGGCAGTTATAAAGGAAGGATACAAAAGCTTTCCAAGTGGGCATACTTCATGGTCCTTTGCTGGTCTTGGTTTCCTTTCATGGTACTTATCAGGGAAAGTTAGAGTGTTTGATCGCAGGGGGCATATTGGGAAACTATGCCTAGTCTTGCTTCCTTTACTTATTGCTGCTCTTGTGGGAATTACTCGAGTTGATGATTACTGGCATCATTGGACTGATGTGTTTGCTGGAGGCCTTATAGGACTTACCGTGTCTTCAATCTGCTATTTGCTACTCTTTCCTTTGCCTACTCATCCACATGGTTGGGCTCCTCATGCTTTTTTTCTTATGATGAGAGAGAGTGATTCTCCTTCCCAACGAGGAAGCCAAACTCCAGATACAACAAGACTAGATGAGTTTCCCCTGCAAATGGCGGAAATGGAAAGTGGGACAAGATATATGTGA
Predicted protein sequences of Glyma18g06576
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g06576.1 sequence type=predicted peptide gene model=Glyma18g06576 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVFQSTGSKLALSHMHDWLILLLLAAMDGALNMIEPFHRYIGKDMMRDLMFPFKEDTIPMWGVPILSIFIPILIFIAFYFARRDVYDLHHATLGLMFSSLITGVITDSIKDAVGRPRPNFFHRCFPDNIPVFDKDNGDVLCTGIKAVIKEGYKSFPSGHTSWSFAGLGFLSWYLSGKVRVFDRRGHIGKLCLVLLPLLIAALVGITRVDDYWHHWTDVFAGGLIGLTVSSICYLLLFPLPTHPHGWAPHAFFLMMRESDSPSQRGSQTPDTTRLDEFPLQMAEMESGTRYM*
>Glyma18g06576.2 sequence type=predicted peptide gene model=Glyma18g06576 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVFQSTGSKLALSHMHDWLILLLLAAMDGALNMIEPFHRYIGKDMMRDLMFPFKEDTIPMWGVPILSIFIPILIFIAFYFARRDVYDLHHATLGLMFSSLITGVITDSIKDAVGRPRPNFFHRCFPDNIPVFDKDNGDVLCTGIKAVIKEGYKSFPSGHTSWSFAGLGFLSWYLSGKVRVFDRRGHIGKLCLVLLPLLIAALVGITRVDDYWHHWTDVFAGGLIGLTVSSICYLLLFPLPTHPHGWAPHAFFLMMRESDSPSQRGSQTPDTTRLDEFPLQMAEMESGTRYM*