Glyma18g06560 - SoyBase

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Report for Sequence Feature Glyma18g06560

Feature Type:	gene_model
Chromosome:	Gm18
Start:	5113098
stop:	5115923
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g06560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G58470	AT	Annotation by Michelle Graham. TAIR10: TBP-associated factor 15B \| chr5:23638566-23640854 REVERSE LENGTH=422	SoyBase	E_val: 3.00E-78	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR23238	Panther	RNA BINDING PROTEIN	JGI		ISS
PTHR23238:SF17	Panther		JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
PF00641	PFAM	Zn-finger in Ran binding protein and others	JGI		ISS
UniRef100_G7J0R5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: HIV Tat-specific factor-like protein n=1 Tax=Medicago truncatula RepID=G7J0R5_MEDTR	SoyBase	E_val: 8.00E-123	ISS
UniRef100_I1MZV7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MZV7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g06560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g06560

Paralog	Evidence	Comments
Glyma11g29430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g06560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g058200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g06560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g06560

Limit To All Plant Sequences

>Glyma18g06560.1   sequence type=CDS   gene model=Glyma18g06560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGGAGCGTACGGTCAAGACGGCGGCGGTTCCGCGCCACCGTCTTATGGAGCCAGCGGCGGATACGGTTCCACCGGCGGTGGTGCCGGTGGAGGTGGTAGTTATGGTGGCGGAGGCTATGGAGGAGGAGGAGGTGGTGGCGGATATGGTGGTAGTGATGGCGGGGGAGGTGGAGGTTACGGAGCCAAAGGCAGCGGAAACGGCGGCGGATATGGTGGTAACGATGGTGGAGGTTATGGCGGAAGAGGCGGCTACAGTGGAAACGATGGCGGAGGCTATGGAGGAAGAGGCGGCGGGGGAGGTGGTGGTCAAGGTGGCCGGGGAGGTGGAGGTTATGGTGGTCGAGGAGGTGGTGGTGGATTTCAAGGCGGAGATCGCGGTGGTCGAGGTGGCGGTCGCGGCGGCGGCCGTGGCGGCGGTAGAGATGGAGACTGGCGTTGTCCTAACCAAAGTTGTGGGAATTTGAACTTTGCAAAAAGGGTTGAATGCAACAAATGCGGTGCTCCAAGTCCTAATCCCAATAGTTCTAATGACCGTGGTGGTGGTTATAATAGAGGAGGAGGAGGAGGTGGGGGCTATGGTAACAATCGAGGAGGAAGAGGTAATGACTATAACAGTGGAGGGGGTAGATCTGGGAGTTATGATGGAGGGAGAGGCAATGACTATAACAGTGGAAGGAGTGGTAGTAGTGATGGTAGAGGTGGTTCATACAGAGGTAATCAAGGTAGAGAAGATGGTGGTTATGGTCAAGTTCCTGCTCCTACTGCCCAATCTTATGGTGGTGGTGCTGGTGGAAACTACCCACCCACTTACAGTTCTTATGGTGGTGGGAATGCAAGTTATGGAACAGAAGCAGTTCCTCCACCTGCAAGTTATACTGGTGGACCCAATTCCTATCCTCCATCATATGGGGGTAATGTGGGTGGTTATGGGGGAGATAATCAAGGGGATGGACGGAGTGGCGGTAGATCCGGGCCTCCTACTGGATATGACAGCACTTATGGTGCTGGTAATCGAGGTGGATTTGGTGGATCTTCTGCTGAGCCCCCTGCTGCAGTGAGACAGTGTGATGAGAATTGTGATGATACATGTGACAACTCTAGAATCTACATCTCAAACCTACCACCAGATGTGACTATTGAAGAATTGAGGGAACTTTTTGGAGGCATTGGACAAGTTGGAAGAATAAAGCAGAAGAGGGGCTATAAAGATCAGTGGCCTTGGAACATAAAGATTTACACTGATGATAATGGAAACAATAAGGGTGATGCTTGCCTTGCTTATGAAGACCCTTCTGCAGCACATTCTGCTGGCGGTTTTTACAATAATTATGATTTGAGGGGTTACAAAATCAGTGTTGCAATGGCAGAAAAATCTGCACCAAGAGCTCCACCTGCATATAACCAAGGGGGCAATAGGGGTGGCTATGGTGGAGATAGACGCAGAGACAATTATAGAGATGGAGGTGGTGGTTCTGGGCCTGATAGGCGTGATCATTATGGAAATCGTTCTCGTCCATACTGA

Predicted protein sequences of Glyma18g06560

Limit To All Plant Sequences

>Glyma18g06560.1   sequence type=predicted peptide   gene model=Glyma18g06560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGAYGQDGGGSAPPSYGASGGYGSTGGGAGGGGSYGGGGYGGGGGGGGYGGSDGGGGGGYGAKGSGNGGGYGGNDGGGYGGRGGYSGNDGGGYGGRGGGGGGGQGGRGGGGYGGRGGGGGFQGGDRGGRGGGRGGGRGGGRDGDWRCPNQSCGNLNFAKRVECNKCGAPSPNPNSSNDRGGGYNRGGGGGGGYGNNRGGRGNDYNSGGGRSGSYDGGRGNDYNSGRSGSSDGRGGSYRGNQGREDGGYGQVPAPTAQSYGGGAGGNYPPTYSSYGGGNASYGTEAVPPPASYTGGPNSYPPSYGGNVGGYGGDNQGDGRSGGRSGPPTGYDSTYGAGNRGGFGGSSAEPPAAVRQCDENCDDTCDNSRIYISNLPPDVTIEELRELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDNGNNKGDACLAYEDPSAAHSAGGFYNNYDLRGYKISVAMAEKSAPRAPPAYNQGGNRGGYGGDRRRDNYRDGGGGSGPDRRDHYGNRSRPY*

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