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Report for Sequence Feature Glyma18g06530

Feature Type:gene_model
Chromosome:Gm18
Start:5095953
stop:5097007
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g06530
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G30130AT Annotation by Michelle Graham. TAIR10: Lateral organ boundaries (LOB) domain family protein | chr2:12868740-12869684 FORWARD LENGTH=193 SoyBaseE_val: 1.00E-74ISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0010016GO-bp Annotation by Michelle Graham. GO Biological Process: shoot morphogenesis SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
PF03195PFAM Protein of unknown function DUF260 JGI ISS
UniRef100_G7J0R0UniRef Annotation by Michelle Graham. Most informative UniRef hit: LOB domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J0R0_MEDTR SoyBaseE_val: 2.00E-89ISS
UniRef100_I1MZV5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MZV5_SOYBN SoyBaseE_val: 6.00E-124ISS

Expression Patterns of Glyma18g06530
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g06530
ParalogEvidenceComments
Glyma11g29450 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g06530 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g058000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g06530
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g06530
>Glyma18g06530.1   sequence type=CDS   gene model=Glyma18g06530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGGTACCTCACCTTGTGCTTCTTGCAAGTTGTTGAGACGTCGTTGCTCCAAGGAATGTATCTTTGCTCCTTACTTTCCTTCTGATGACCCTCGCAAGTTTGCCATTGTGCATAAGGTGTTTGGTGCTAGCAATATCAGCAAAATGCTGCAGGAGCTTCCAATTCATCAAAGAGCAGATGCTGTGAGCAGTTTAGTTTATGAGGCAAATGCAAGAGTGAGAGACCCAGTGTATGGATCTGTTGGAGCCATATCATACCTACAAAGCCAAGTTTCACAATTGCAAATGCAGCTTGCAGTGGCTCAGGCAGAGATTCTATGTATCCAGATGCAGCAGCAAGAGCCTACCTTAGCCACACAATTAGTAGACCAAGATGACAAATCAATGCTCCTATCTGTAAACAACAACTATGAAATGCTTCCTCAGTTTCTTAACTTTCCTTCATCTTCCTCCTCATCTTCCAATATATTCCAAGACCCTCATGAGCCTCTTAAGAGAGAGTCTTTTTGGACTTAA
Predicted protein sequences of Glyma18g06530
>Glyma18g06530.1   sequence type=predicted peptide   gene model=Glyma18g06530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGTSPCASCKLLRRRCSKECIFAPYFPSDDPRKFAIVHKVFGASNISKMLQELPIHQRADAVSSLVYEANARVRDPVYGSVGAISYLQSQVSQLQMQLAVAQAEILCIQMQQQEPTLATQLVDQDDKSMLLSVNNNYEMLPQFLNFPSSSSSSSNIFQDPHEPLKRESFWT*






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