Report for Sequence Feature Glyma18g06435
Feature Type: gene_model
Chromosome: Gm18
Start: 4992400
stop: 5014649
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g06435
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G58450 AT
Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:23626826-23632071 FORWARD LENGTH=1065
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
KOG2053
KOG
Mitochondrial inheritance and actin cytoskeleton organization protein
JGI ISS
PTHR22767 Panther
N-TERMINAL ACETLYTRANSFERASE-RELATED
JGI ISS
PTHR22767:SF3 Panther
PEPTIDE ALPHA-N-ACETYLTRANSFERASE-RELATED
JGI ISS
PF09797 PFAM
N-acetyltransferase B complex (NatB) non catalytic subunit
JGI ISS
UniRef100_B9RRH8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: TPR repeat-containing protein R13F6.10, putative n=1 Tax=Ricinus communis RepID=B9RRH8_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI000233EAFC UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233EAFC related cluster n=1 Tax=unknown RepID=UPI000233EAFC
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g06435
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma18g06435
Paralog Evidence Comments
Glyma11g29645 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g06435 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g057100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g06435
Coding sequences of Glyma18g06435
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g06435.1 sequence type=CDS gene model=Glyma18g06435 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGTCCAAGTTCGGCTTAGCCGGCGGCATTCCCGAGCGCAAGGTCCGCCCAATATGGGACGCCATTGATTCCCGCCAGTTCAAGAACGCTCTCAAGCACGTCTCCACGCTCCTCGCCAAGCACCCTAATTCCCCCTACGCTCTCGCTCTGAAAGCACTCGTGCTGGAACGAATGGGGAAGCCTGACGAAGCGTTATCTGTTGCGCTCAATGCGAAGGAGCTTCTCTACGCCAATGATTCTCTGTTGATGGATGATCTCACTCTCAGCACGCTGCAGATTGTGTTTCAGCGTTTGGATCACTTGGATTTGGCTACTGGGTGTTATGAACATGCCTGTAGTAAATTCCCAAGTAACTTGGAACTAATGATGGGGCTGTTTAATTGCTATGTTCGAGAGTACTCATTTGTGAAGCAACAACAGACAGCTATCAAAATGTACAAGCATTATCAACAGGTTGGAGAAGAAAAAGAAAGGTTTCTTCTTTGGGCAGTTTGTAGCATCCAATTACAGGTACTTTGCGGCAGTGGAGAAGACAAACTTTTATTTTTAGCTGAAGGCTTACTTAAGAAACATGTTGCTTCACATAGCTTACATGAGCCGGAAGCTCTTATGATCTACATTTCTATATTGGAACGACAAGCTAAGTTTGGGGATGCTTTGGAAATTCTCTCTGGGAAATTGGGATCACTGTTGCAGATTGAAGTTGATAAGCTACGGATGCAGGGGAGACTTCTGGCTCGGGCAGGTGACTACACTGCTGCTGCTGATATCTTTCACAAAATTCTAGAGTCATGTCCAGATGACTGGGAGAGTTTCCTTCATTACCTAGGTTGTTTGCTAGAAGATGAGAGCATTTGGTGTGATGAGACTGTTAATGATCCAGTTCATCCCCCAAAGTTTGTCAATGACCAAGTCTCACACTTGACAGATGAACAGTTTGACGGTCAAATATCAATTGCATCAGCTTGTGTGCAGAAGTTACAAGCAGATACCATCAATAACTTGATAAGGTGTCCATACCTGGCAACTATAGAAATTGAAAGAAGAAAGCATTTACGTGGGAAGGGAAATGATGACAATTTAATGGATGGTGTTGTGCAATACTTTTGCAGGTTTGGTCACTTGGCCTGCTTTACTTCCGATGTTGAGATGTTTGTTGAAGTCCTCACTACTGATAAGAAGGCAGAACTCTTGGAGAAGTTGATGAAAACCAGAGACTCTTTATCAGCTCCACTAACCAAGACACTTGGGCTGTCTATAAGCTTTTTCAAAATTAAACAATTATTGCTAGGGGACATGTCCAAGTCTTCTGCAAGTGATCTTGAAGTCTCTTGTGTTCAAATGTTTGAAATGTATTGCAAAAACCTTCCGCTTTCAAAAGATATGGATCCACAAGAGAGCATGCATGGTGAGGAGCTGCTTTCAATGATATGTAATATTTTGGTCCAGTTATTCTGGCGTACCCAGAATGTTGGCTATTTGGTAGAGGCAATTATGGTTTTGGAGTTCGGCTTGGCAATACAAAGATATGTGTCACAATACAAGATCTTGCTGCTGCATTTGTATAGCCACTGTGGTGCTCTATCAGTGGCACATGAATGGTATAAGTCCCTGGAAGTCAAGAATATTTTGATGGAAAGTATTTTGCACCACATATTGCCTCAGATGTTGGTATCTCCACTTTGGACTGAGTTAAACAATCTTCTAAAGGATTACCTGAAGTTTATGGATGATCACTTCAGAGAATCTGCGGATTTGACATTTCTTGCATATCGACATAGAAATTACTCAAAAGTAATTGAATTTGTCCAGTTCAAAGATAGGTTGCAGCACTCTAGTCAGTATTTAGTGGCTCGAGTTGAAACATCCATTTTACAACTAAAGCAGAATGCAGATAACATTGAAGAAGAGGAGGGTGTCCTTCAAAGCTTGAAATGTGGTATTCAGTTCCTTGAGCTGTCTAAGGAGGTAGGGTCAAAGTCTTTGACCTTCAATGAAGACTTGCAGTCACGGCCCTGGTGGACACCAACTTCAGAGAAAAATTACCTTTTAGGGCCATTTGAAGGGATTTCTTATTATCCTAGAGAAATATTGACCAAAGATAGGGAAACAAGTTTAAAGAGAGTCATTGAAAAGAAATCCCTACTTCCACGGATGATATATCTTTCGATTCAAAGTGCTTCAGCATCAATCAAGGAGCATGTTGAGGTCAATGGTTCTGTTACCCCAGACATCATTTCAGAGCTGAAATTGTTGCTGGAGTGCTATGCACAATTGTTGGGCTTTTCTCTCACTGAAGCAATAGAAGTGGTCATGGGTTTCTCCAATGGTGAAAGATCTTGTGTGGTTTCTGACTCCAACTTGATTGACTGGTTGAATTTCACTGTATTTTTAAATGCATGGAGCTTGAGCTCCCATGAACTTGTGCAGCCAGACGGAAATGGATGTAGGCCTCGAATTTGGAATATCTTAGATTCTATGCTGGAGAAGTATATCTTAGAGAAGGTTAGGTTCCAAGAGCCTCAGCTCTGCTCTCCTTGGAGTGGCATGGAACTTCTGATGCAGTTAGTTACAGAACCTTTGGCGTGGCATGGACTTGTAATCCAATCTTGTCTGAGATCCTGTTTTCCATCTGGTAAAAAGAAAAAGAAAAGTGGATTAGCTTATCAGTCTAGCATGAATCTGACTAAAGCAATCACAGATTCTGTCGTGCATTTATCTCACGTATTAGAGGATGTTTTGACATGGATAACTGAATGGAACAAAAGACCTGAAGATGAGCATTTGGAGAATATTCTTTTACTTCTTCGGAAAGACGGGCATAATGATGGACCGGGGGAGGTCTTTCACATTTTAGAAACATTCATTTCCTCTATGAATGATGCAGAACTTGGTGATCGCATCTCCCAATCTCTAAAGTCTTGGAGTCCTGCTGACGTTTTCAGGAAAATGATGACTGGGAAGCTAAAAGTACTGACAGAATTTTCTGCCATCTGTGAGTCAAAATTGAAGTTATTTAATTCTATGAAACAGCAGATAGCTCAACTGTGA
Predicted protein sequences of Glyma18g06435
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g06435.1 sequence type=predicted peptide gene model=Glyma18g06435 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASKFGLAGGIPERKVRPIWDAIDSRQFKNALKHVSTLLAKHPNSPYALALKALVLERMGKPDEALSVALNAKELLYANDSLLMDDLTLSTLQIVFQRLDHLDLATGCYEHACSKFPSNLELMMGLFNCYVREYSFVKQQQTAIKMYKHYQQVGEEKERFLLWAVCSIQLQVLCGSGEDKLLFLAEGLLKKHVASHSLHEPEALMIYISILERQAKFGDALEILSGKLGSLLQIEVDKLRMQGRLLARAGDYTAAADIFHKILESCPDDWESFLHYLGCLLEDESIWCDETVNDPVHPPKFVNDQVSHLTDEQFDGQISIASACVQKLQADTINNLIRCPYLATIEIERRKHLRGKGNDDNLMDGVVQYFCRFGHLACFTSDVEMFVEVLTTDKKAELLEKLMKTRDSLSAPLTKTLGLSISFFKIKQLLLGDMSKSSASDLEVSCVQMFEMYCKNLPLSKDMDPQESMHGEELLSMICNILVQLFWRTQNVGYLVEAIMVLEFGLAIQRYVSQYKILLLHLYSHCGALSVAHEWYKSLEVKNILMESILHHILPQMLVSPLWTELNNLLKDYLKFMDDHFRESADLTFLAYRHRNYSKVIEFVQFKDRLQHSSQYLVARVETSILQLKQNADNIEEEEGVLQSLKCGIQFLELSKEVGSKSLTFNEDLQSRPWWTPTSEKNYLLGPFEGISYYPREILTKDRETSLKRVIEKKSLLPRMIYLSIQSASASIKEHVEVNGSVTPDIISELKLLLECYAQLLGFSLTEAIEVVMGFSNGERSCVVSDSNLIDWLNFTVFLNAWSLSSHELVQPDGNGCRPRIWNILDSMLEKYILEKVRFQEPQLCSPWSGMELLMQLVTEPLAWHGLVIQSCLRSCFPSGKKKKKSGLAYQSSMNLTKAITDSVVHLSHVLEDVLTWITEWNKRPEDEHLENILLLLRKDGHNDGPGEVFHILETFISSMNDAELGDRISQSLKSWSPADVFRKMMTGKLKVLTEFSAICESKLKLFNSMKQQIAQL*