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Report for Sequence Feature Glyma18g06340

Feature Type:gene_model
Chromosome:Gm18
Start:4926669
stop:4927621
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g06340
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G10985AT Annotation by Michelle Graham. TAIR10: senescence associated gene 20 | chr3:3442776-3443108 FORWARD LENGTH=110 SoyBaseE_val: 2.00E-18ISS
GO:0007568GO-bp Annotation by Michelle Graham. GO Biological Process: aging SoyBaseN/AISS
GO:0009620GO-bp Annotation by Michelle Graham. GO Biological Process: response to fungus SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF07107PFAM Wound-induced protein WI12 JGI ISS
UniRef100_G7KFI5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Wound-induced protein n=1 Tax=Medicago truncatula RepID=G7KFI5_MEDTR SoyBaseE_val: 3.00E-52ISS
UniRef100_I1MZU1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MZU1_SOYBN SoyBaseE_val: 7.00E-116ISS

Expression Patterns of Glyma18g06340
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g06340
ParalogEvidenceComments
Glyma11g29750 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g06340 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g056400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g06340
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g06340
>Glyma18g06340.1   sequence type=CDS   gene model=Glyma18g06340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTACTTGTGTTCCGGAGCTGGCTAACTCACAATCACAAGAATGCTTGGAGGAATATGTGGAACGCAACACGAGAGTGGTCACAGAGTTATACAAAGCCCTAACCTCCAAAGACCCCGAGACGCTCCATGGGCTTGTGACCCAAGACTTGGAGTGGTGGTTCCACGGCCCACCATGCCATCGGCACCACTTGGTCCCCTGGCTCACGGGCTCCTCACCCTCCTCAAAGGCTTTGGTTCCACAACACATGGTGGGCTTTGGGCCAGTGGTAATTGCTGAAGGGTTTGATGATGACCATTTGGTGTGGTGGGTGCACGCGTGGACCGTCACTGCTGATGGGCTCATAACTCAGGTCAAAGAGTATGTGAACACTTCCGTGACCGTGACTCTTTTATCACAACAAGTGCTTCCAAATGCTTCCAAGTGTCAATGCATTTGGCAGAGTAGGCTTTGTGATGAATCTGTGCCTGGACTTATTCTGCCAATCTAG
Predicted protein sequences of Glyma18g06340
>Glyma18g06340.1   sequence type=predicted peptide   gene model=Glyma18g06340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFTCVPELANSQSQECLEEYVERNTRVVTELYKALTSKDPETLHGLVTQDLEWWFHGPPCHRHHLVPWLTGSSPSSKALVPQHMVGFGPVVIAEGFDDDHLVWWVHAWTVTADGLITQVKEYVNTSVTVTLLSQQVLPNASKCQCIWQSRLCDESVPGLILPI*






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