Glyma18g06260 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g06260

Feature Type:	gene_model
Chromosome:	Gm18
Start:	4836802
stop:	4843802
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g06260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G06950	AT	Annotation by Michelle Graham. TAIR10: translocon at the inner envelope membrane of chloroplasts 110 \| chr1:2130303-2135563 REVERSE LENGTH=1016	SoyBase	E_val: 0	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0045036	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast	SoyBase	N/A	ISS
GO:0045037	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into chloroplast stroma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0031897	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Tic complex	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
UniRef100_G7KFK1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chloroplast inner envelope protein (IEP110) n=1 Tax=Medicago truncatula RepID=G7KFK1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MZT5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MZT5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g06260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g06260

Paralog	Evidence	Comments
Glyma11g29842	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g06260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g055700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g06260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g06260

Limit To All Plant Sequences

>Glyma18g06260.1   sequence type=CDS   gene model=Glyma18g06260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCCCTCACACACTCTCATTCCTTCTTCTCACTGCTACCCTCCCCTCCTTCCTTTTACTTTCGCAACTCTTTGCACCTCCCAACGACGCCGTTTCAGAGTCTTCTTCCCTCGCTGTTTCTCCGCCACCTCCGCTCCGCCGCAAGTCCCGAAGGATCTCTGCGGAATCGAACACCTCGTCGATAAGCTGTCGCCGCCGGTGCGGCTCGCAACCTCCGTCGTTGTCTTCGCCGCCGCTGCCTCCGCCGGATATGGACTCGGCTCCAAGCTCGGTGGATGCCAGAATGTCGCTATCGGCGGAGCCGTCGCGTTCGGCGTGGCCGGCACCGCCGCTGCTTACGCTCTCAATGCGGTTGCGCCGCAAGTCGCTGCCGTGAATTTGCATAACTATGTGGTAGGGCTTGATAATCCTTTCTTGTTGAAGAAGGAAGACATCGATGGAATCTCCAATAGGTATGGTGTGAGCAAGCAGGATGACGCATTTAAAGCGGAGATTTGTGATATTTACAGCCACTTTGTGTCGTCTTTGCTTCCTCCTGGTGATGTGGAGCTTAAAGGAGACGAGGCTGATAAGATCATTAGCTTCAAGAATTCTTTAGGAATTGATGACCCAGATGCAGCTGCTATGCATATTGAGGTTGGTAGGAACATTTTCAGGCAGAGGCTTGAGGTTGGGGATTGTGAAGCGGATATTGAGCAATACCGGGCATTTCAGAAGCTGATATATATGTCATATCTCGTTTTTGGAGAAGCATCATCATTCCTTCTACCTTGGAAGCATGTGTTCAAGGTCACTGATTCTCAGGTTGAAGAAGCTATACGTGACAATGCCCAGCGATTGTATGCTTCCAAGCTGAAATCAGTTGGCAGAGATATTGATGCAGAACAACTCGTTACACTTAGAGAAGCACAACACTTGTATTGCCTTTCTGATCAGCTTGCTGAAAACTTGTTTAAGGAGCACACAAGGAAATTGGTTGAGGGAAGTATTTCAGTAGCACATGGTATACTTAAATCCCACACAAGATCTGTCTATGGAGTTATCGAAGCTGTAGAGGAGCTTGATAGTGTATTGGCTTTTAATAATATACTAATCTCATTAAAGAACCACCCAGATGTGGACCACTTTGCTCAAGGTGTTGGCCCAGTTTCTTTACTGGGTGGTGAGTATGATGGTGACAGAAAGATAGAGGACTTGAAGCTCCTTTATAGAGCATATATTGCAAATGCTTTGTCTAGTGGTCGCATGGAAGATAATAAAGTAGCTGCACTAAATCTGTTGAGAAAATTTTTTGGGTTGGGTAAACGTGAAGCCGAAGCCATTATGCTTGATGTTACATCAAGAGTATATCGCAAAAAACTTGCACAGGCTGTCTCAGGTGGTTCTTTAGAAATGACAGATAGCAAGGAAACATTCCTTCAAAAACTTTGTGATGAATTACACTTTGATCCACAAAAGGCCTGTGAAATTCATGAAGAAATTTACCGCCAAAAGCTTCAGCAATTGGTGGCTGATGGGGAGCTCAGTGATAAAGATGCTGCTGCTTTGTTGAGGTTGGGTGTAATGCTCTGTATACCTCAACAGACCATTGATACAGCTCACTCGGATATCTGTGGCAGTTTGTTTGAAAAGGTTGTCAAGGATGCGATTGCATCAGGGGTTGATGGAAATGGTGCTGAGATGAGGAAATCAGTAAGAAAAGCAGCACATGGCTTGCGACTAACCGGGGATACTGCTATGTCTATTGCAAGCAAGACCGTAAGGAAAATATTTATTAATTACATAAAACGTGCACGAGCAGCTGGGAATTGTACAGAATCTGCAAAAGAATTAAAGAAAATGATAGCTTTCAACACCTTGGTTGTGACTGAGTTGGTGAATGACATTAAAGGGGAGTCAGATGATGAGTCGACTGAAGAACCTGGAAAGGATGACGTGATACAAACTGAAGATGAAGAATGGGATTCTCTGCAGACACTTAAGAAAATAAGACAAAACAAAGAACTCGAAGCAAAGCTGGGGAATCTTAGTCATACAGAAATTACTCTTATAGATGACCTTTCGGAAAGAGATAGAACTGATCTTTACAAGATATACCTCCTATTCTGTTTAACTGGTGAAGAGACAAGGGTTCCATTTGGTGCCCAAATCACTGCCAAGAAGGATGATTCAGAATATGTTCTGCTAAATCAGCTTGGCGGGATTCTTGGTTTGAGTGGTAAAGAAATAGTGGAAGTACATAGAAGTCTAGCAGAGCAAGCTTTTAGGCAGCAAGCTGAGGTAATTTTAGTGGATGGACAGCTGACAAAGGCCAGGGTGGAGCAGCTTAATAATCTGCAGAACCAAGTTGGCTTACCTCAAGAATATTCTCAGAAGATAATCAACAGTATAACTACTACCAAAATGGCAGCAGCCATTGAAACTGCAGTAACTCAAGGGAAGCTTAGTATTAAGCAGATAAGAGAACTTAAGGAAGCCAGTGTTGAGATAGACAACATGGTATCTGAAGACTTGAGAGAGACCCTCTTCAAAAAAACTGTTGGTGATATTTTCTCATCAGGCACTGGAGAGTTCGATGAGGAGGAAGTATATGAAAGAATCCCGTTGGATCTCAACATTAATAAAGAGAAAGCAAGAGGCGTGGTTCTAGAGCTTGCAGAAACTAGGTTATCTAACTCTCTCATTCAAGCCGTGGCACTATTAAGACAGAGAAATCGTGAAGGGGTGGTTTCTTCACTCAATAACATGCTGGCTTGTGACAAAGCAGTGCCCTCTCGGCCACATTCGTGGGGAGTGCAAGAGGAGCTTGCTGATCTTTATACTATATACATGAAGAGTAATGCAACTCCTGAAAAATTGTCTCGTTTGCAGTATCTGTTGGGCATAAATGATTCCACAGCAGCTTCTCTTCGAGAGATGGGAGAAAGATTGCTTAGTAATAATGCAGAGGTAGAGGAGTTTGTATTCTGA

Predicted protein sequences of Glyma18g06260

Limit To All Plant Sequences

>Glyma18g06260.1   sequence type=predicted peptide   gene model=Glyma18g06260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNPSHTLIPSSHCYPPLLPFTFATLCTSQRRRFRVFFPRCFSATSAPPQVPKDLCGIEHLVDKLSPPVRLATSVVVFAAAASAGYGLGSKLGGCQNVAIGGAVAFGVAGTAAAYALNAVAPQVAAVNLHNYVVGLDNPFLLKKEDIDGISNRYGVSKQDDAFKAEICDIYSHFVSSLLPPGDVELKGDEADKIISFKNSLGIDDPDAAAMHIEVGRNIFRQRLEVGDCEADIEQYRAFQKLIYMSYLVFGEASSFLLPWKHVFKVTDSQVEEAIRDNAQRLYASKLKSVGRDIDAEQLVTLREAQHLYCLSDQLAENLFKEHTRKLVEGSISVAHGILKSHTRSVYGVIEAVEELDSVLAFNNILISLKNHPDVDHFAQGVGPVSLLGGEYDGDRKIEDLKLLYRAYIANALSSGRMEDNKVAALNLLRKFFGLGKREAEAIMLDVTSRVYRKKLAQAVSGGSLEMTDSKETFLQKLCDELHFDPQKACEIHEEIYRQKLQQLVADGELSDKDAAALLRLGVMLCIPQQTIDTAHSDICGSLFEKVVKDAIASGVDGNGAEMRKSVRKAAHGLRLTGDTAMSIASKTVRKIFINYIKRARAAGNCTESAKELKKMIAFNTLVVTELVNDIKGESDDESTEEPGKDDVIQTEDEEWDSLQTLKKIRQNKELEAKLGNLSHTEITLIDDLSERDRTDLYKIYLLFCLTGEETRVPFGAQITAKKDDSEYVLLNQLGGILGLSGKEIVEVHRSLAEQAFRQQAEVILVDGQLTKARVEQLNNLQNQVGLPQEYSQKIINSITTTKMAAAIETAVTQGKLSIKQIRELKEASVEIDNMVSEDLRETLFKKTVGDIFSSGTGEFDEEEVYERIPLDLNINKEKARGVVLELAETRLSNSLIQAVALLRQRNREGVVSSLNNMLACDKAVPSRPHSWGVQEELADLYTIYMKSNATPEKLSRLQYLLGINDSTAASLREMGERLLSNNAEVEEFVF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain