Report for Sequence Feature Glyma18g06220
Feature Type: gene_model
Chromosome: Gm18
Start: 4807900
stop: 4812141
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g06220
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G05340 AT
Annotation by Michelle Graham. TAIR10: Peroxidase superfamily protein | chr5:1579142-1580819 REVERSE LENGTH=324
SoyBase E_val: 6.00E-121 ISS
GO:0006979 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to oxidative stress
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0005618 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cell wall
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0048046 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: apoplast
SoyBase N/A ISS
GO:0004601 GO-mf
Annotation by Michelle Graham. GO Molecular Function: peroxidase activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0020037 GO-mf
Annotation by Michelle Graham. GO Molecular Function: heme binding
SoyBase N/A ISS
PF00141 PFAM
Peroxidase
JGI ISS
UniRef100_C6TEG1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TEG1_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q40372 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Peroxidase n=1 Tax=Medicago truncatula RepID=Q40372_MEDTR
SoyBase E_val: 7.00E-179 ISS
Expression Patterns of Glyma18g06220
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma18g06220
Paralog Evidence Comments
Glyma11g29920 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g06220 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g055400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g06220
Coding sequences of Glyma18g06220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g06220.1 sequence type=CDS gene model=Glyma18g06220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTCTAATATTCAAACTCTGCTTGTGCTTGTTCTGGCAACATTGGGAACATTTATGATCCCTTCCAATGCACAGCTTACTCCTAATTTCTATAAGAAAGTTTGTCCCCAGGCATTGCCAATCATAAGGTCTGTCGTTCACCGAGCAATTATTCGTGAACGACGCATTGGAGCCTCCTTGCTGCGTTTGCATTTCCATGACTGCTTTGTTAATGGTTGTGATGGATCAGTTCTACTGGATGACACGCACAACTTCACTGGCGAGAAAACAGCCCTACCTAATCTGAATTCAATAAGAGGTTTGGAAGTGGTTGATGAGATTAAGGCAGCGGTTGACAAAGCTTGCAACCGTCCTGCTGTATCATGTGCAGATATCTTAGCTATAGCTGCTCGTGATTCTGTGGCCATATTAGGGGGTCCACACCTATGGTACGGCGTGTTACTAGGCAGAAGAGACGCGAGAACAGCAAGCAAGGATGCTGCAAACGCCAATCTCCCTCCTCCATTTTTCAACTTCTCACAGCTTCTCTCCAACTTCAACTCTCACGGATTAGACCTCAAAGATCTTGTGGCACTCTCTGGTGGCCACACCATAGGGTTTGCAAGGTGCACTACCTTCAGGGACCGCATCTACAACGACACCATGGCCAACATAAACCCTACTTTTGCAGCCTCTTTGAGGAAAACATGCCCTAGAGTTGGCGGTGACAACAACTTGGCACCGTTGGATCCAACTCCTGCAACGGTTGACACTTCATACTTCAAGGAATTGCTGTGCAAAAAGGGTCTCCTTCATTCGGATCAAGAACTCTACAAGGGAAATGGCAGTGAAAGTGACAAGTTGGTGGAGCTTTATAGCAGGAACCCTTTTGCATTTGCTAGAGATTTCAAGGCTTCTATGATCAAGATGGGTAACATGAAGCCTCTCACAGGGAACAAAGGAGAGATCAGACGCAACTGCAGAAGAGTTAATTAA
Predicted protein sequences of Glyma18g06220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g06220.1 sequence type=predicted peptide gene model=Glyma18g06220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASNIQTLLVLVLATLGTFMIPSNAQLTPNFYKKVCPQALPIIRSVVHRAIIRERRIGASLLRLHFHDCFVNGCDGSVLLDDTHNFTGEKTALPNLNSIRGLEVVDEIKAAVDKACNRPAVSCADILAIAARDSVAILGGPHLWYGVLLGRRDARTASKDAANANLPPPFFNFSQLLSNFNSHGLDLKDLVALSGGHTIGFARCTTFRDRIYNDTMANINPTFAASLRKTCPRVGGDNNLAPLDPTPATVDTSYFKELLCKKGLLHSDQELYKGNGSESDKLVELYSRNPFAFARDFKASMIKMGNMKPLTGNKGEIRRNCRRVN*