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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G45150 | AT | Annotation by Michelle Graham. TAIR10: cytidinediphosphate diacylglycerol synthase 4 | chr2:18613519-18615347 FORWARD LENGTH=382 | SoyBase | E_val: 2.00E-175 | ISS |
| GO:0008654 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phospholipid biosynthetic process | SoyBase | N/A | ISS |
| GO:0010207 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosystem II assembly | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0004605 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatidate cytidylyltransferase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| PTHR13773 | Panther | PHOSPHATIDATE CYTIDYLYLTRANSFERASE | JGI | ISS | |
| PF01148 | PFAM | Cytidylyltransferase family | JGI | ISS | |
| UniRef100_B9RD70 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidate cytidylyltransferase n=1 Tax=Ricinus communis RepID=B9RD70_RICCO | SoyBase | E_val: 9.00E-178 | ISS |
| UniRef100_UPI00015B7D30 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00015B7D30 related cluster n=1 Tax=unknown RepID=UPI00015B7D30 | SoyBase | E_val: 0 | ISS |
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Glyma18g06190 not represented in the dataset |
Glyma18g06190 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g30030 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g055100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g06190.3 sequence type=transcript gene model=Glyma18g06190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGGGTAATAAAAATGCTCCAAATCGAAGCTTTAAAAGAACATTCCATTCTTCTTCTTCTATCAACTCGGTCTCATGGCTCACCCTCGACTCACTAACTCGCTCTGTTCTTCTCCCCTTCGCAATCTCAATCCCAATCCCAAACTCATTCCTCTCTGCACTTGCTCATGCCGTCCCTTCTCTTCGCAATCCCTAATTCTCCATTCTCACCCTCTTTTCCTCGCCAAACCCAAACCTCTCCTCCGGTTCGCCCGCCGAACCGGACCGCCCCTCGTCCTCGCCGCCGTCGGCCAGGCCGAACCCGAACTTCCTCAAACCAGTGCCCCCACGGTCATTCCCGAAGACGAGGAGGATTTGCCCTCAAAATCTCAACAGCAGCTTAGGAACCGGGTGGTTTTTGGACTTGGCATTGGGATTAGTGTAGGAGGCATTGTTTTGGCTGGTGGATGGGTCTTCGCGGTTGCCCTAGCTGCTGCTGTCTTTACTGGTGCTCGAGAATATTTTGAATTGGTTCGGAGTCATGGAATTACTGAAGGAATGACACCACCTCCACGTTATGTGTCACGAGTCTGCTCTGTCATTTGTGCCTTGATGCCATTGTTTGTCATGTATCGTGGTCATATTGATGTTTCTGTGACTTCTGCTGCTTTTGTTTTGGCCACAGCATTACTCTTACAAAGAGGAAGTCCTCGTTTTGCACAGCTAAGTAGTGCCATATTTGGGTTATTTTATTGTGGATATCTTCCCTCTTTTTGGCTTAAACTTCGATGTGGTTTAGCAGCTCCAGCCTTGAACACAAGAATAGGAGCAACATGGCCTATACTTCTTGGTGGCCAAGCTCATTGGACAGTTGGTCTTGTGGCAACTTTGATTACCATAAGCAGCGTTATTGCAGCGGATACATTTGCATTTCTTGGTGGCAAGGCATTTGGTAGAACACCACTTACCAGTATAAGTCCAAAGAAGACATGGGAGGGTACTATTATAGGCTTTTGTGGGTGTATAGTTACTTCTGCTGTTCTGTCAAAAATTTTCAGCTGGCCAATACCTTTATCAAGTGCAATAGGTCTTGGTGTTCTAAGTTTCTTTGGGTCTGTTTTTGGTGATCTCACTGAATCAATGATTAAACGAGATGCAGGAGTTAAAGACTCTGGCACACTAATACCTGGTCATGGTGGAGTACTAGACAGAGCGGACAGTTATGTGTTCACGGGTGCTCTAGCATACAACTTTATCAAAACCGTTTTACCACTGTATGGAGTATGACATGAAACAGTGTTAGGTGGTATCTGCATAGTATGTTCACTGACAGCTTTGAAACATTACTGGCGACAAATTGAACTCAAATATTCACGGAAACTCCTGGACATTTTTCATGGGATTAAGTGATGATTTACATAAATTTGGATAAGCTTCTTGGTGGGAAAGAAATTTTTTCTGATGATCATCAGAAAAGGAGCAGCAGAAATTTTCTTATCACGCCAGGTCTACTTGACCACAGTTCATCGCTGCTTCTTTTTCGAATTGCATGAGGTCAATAGGTCACAGATACGAGGACAAAGCAGGGGTATTTATTGTATTTTAACTTGTAAATAGCACAATTGGCTTTGAAAGAAAAAGAACGGTTGCAGAGTCGCTCCAGTTATTTTGATGTCTTGCTAACTTATATTCTAAGGAATACTACTGTAGAATAATCAGAGAAATGTGGGGCTAGTGAAAATAAATTGTTATAAACTTATAATTGGTACTAGTATTGTATTAGTTACTTATATAATTGAAGCCATTAGAAACATTTTCGGGTTTGTCAAATGAAAAGTAAACAGGCC
>Glyma18g06190.2 sequence type=CDS gene model=Glyma18g06190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCACCCTCGACTCACTAACTCGCTCTGTTCTTCTCCCCTTCGCAATCTCAATCCCAATCCCAAACTCATTCCTCTCTGCACTTGCTCATGCCGTCCCTTCTCTTCGCAATCCCTAATTCTCCATTCTCACCCTCTTTTCCTCGCCAAACCCAAACCTCTCCTCCGGTTCGCCCGCCGAACCGGACCGCCCCTCGTCCTCGCCGCCGTCGGCCAGGCCGAACCCGAACTTCCTCAAACCAGTGCCCCCACGGTCATTCCCGAAGACGAGGAGGATTTGCCCTCAAAATCTCAACAGCAGCTTAGGAACCGGGTGGTTTTTGGACTTGGCATTGGGATTAGTGTAGGAGGCATTGTTTTGGCTGGTGGATGGGTCTTCGCGGTTGCCCTAGCTGCTGCTGTCTTTACTGGTGCTCGAGAATATTTTGAATTGGTTCGGAGTCATGGAATTACTGAAGGAATGACACCACCTCCACGTTATGTGTCACGAGTCTGCTCTGTCATTTGTGCCTTGATGCCATTGTTTGTCATGTATCGTGGTCATATTGATGTTTCTGTGACTTCTGCTGCTTTTGTTTTGGCCACAGCATTACTCTTACAAAGAGGAAGTCCTCGTTTTGCACAGCTAAGTAGTGCCATATTTGGGTTATTTTATTGTGGATATCTTCCCTCTTTTTGGCTTAAACTTCGATGTGGTTTAGCAGCTCCAGCCTTGAACACAAGAATAGGAGCAACATGGCCTATACTTCTTGGTGGCCAAGCTCATTGGACAGTTGGTCTTGTGGCAACTTTGATTACCATAAGCAGCGTTATTGCAGCGGATACATTTGCATTTCTTGGTGGCAAGGCATTTGGTAGAACACCACTTACCAGTATAAGTCCAAAGAAGACATGGGAGGGTACTATTATAGGCTTTTGTGGGTGTATAGTTACTTCTGCTGTTCTGTCAAAAATTTTCAGCTGGCCAATACCTTTATCAAGTGCAATAGGTCTTGGTGTTCTAAGTTTCTTTGGGTCTGTTTTTGGTGATCTCACTGAATCAATGATTAAACGAGATGCAGGAGTTAAAGACTCTGGCACACTAATACCTGGTCATGGTGGAGTACTAGACAGAGCGGACAGTTATGTGTTCACGGGTGCTCTAGCATACAACTTTATCAAAACCGTTTTACCACTGTATGGAGTATGA >Glyma18g06190.3 sequence type=CDS gene model=Glyma18g06190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCACCCTCGACTCACTAACTCGCTCTGTTCTTCTCCCCTTCGCAATCTCAATCCCAATCCCAAACTCATTCCTCTCTGCACTTGCTCATGCCGTCCCTTCTCTTCGCAATCCCTAATTCTCCATTCTCACCCTCTTTTCCTCGCCAAACCCAAACCTCTCCTCCGGTTCGCCCGCCGAACCGGACCGCCCCTCGTCCTCGCCGCCGTCGGCCAGGCCGAACCCGAACTTCCTCAAACCAGTGCCCCCACGGTCATTCCCGAAGACGAGGAGGATTTGCCCTCAAAATCTCAACAGCAGCTTAGGAACCGGGTGGTTTTTGGACTTGGCATTGGGATTAGTGTAGGAGGCATTGTTTTGGCTGGTGGATGGGTCTTCGCGGTTGCCCTAGCTGCTGCTGTCTTTACTGGTGCTCGAGAATATTTTGAATTGGTTCGGAGTCATGGAATTACTGAAGGAATGACACCACCTCCACGTTATGTGTCACGAGTCTGCTCTGTCATTTGTGCCTTGATGCCATTGTTTGTCATGTATCGTGGTCATATTGATGTTTCTGTGACTTCTGCTGCTTTTGTTTTGGCCACAGCATTACTCTTACAAAGAGGAAGTCCTCGTTTTGCACAGCTAAGTAGTGCCATATTTGGGTTATTTTATTGTGGATATCTTCCCTCTTTTTGGCTTAAACTTCGATGTGGTTTAGCAGCTCCAGCCTTGAACACAAGAATAGGAGCAACATGGCCTATACTTCTTGGTGGCCAAGCTCATTGGACAGTTGGTCTTGTGGCAACTTTGATTACCATAAGCAGCGTTATTGCAGCGGATACATTTGCATTTCTTGGTGGCAAGGCATTTGGTAGAACACCACTTACCAGTATAAGTCCAAAGAAGACATGGGAGGGTACTATTATAGGCTTTTGTGGGTGTATAGTTACTTCTGCTGTTCTGTCAAAAATTTTCAGCTGGCCAATACCTTTATCAAGTGCAATAGGTCTTGGTGTTCTAAGTTTCTTTGGGTCTGTTTTTGGTGATCTCACTGAATCAATGATTAAACGAGATGCAGGAGTTAAAGACTCTGGCACACTAATACCTGGTCATGGTGGAGTACTAGACAGAGCGGACAGTTATGTGTTCACGGGTGCTCTAGCATACAACTTTATCAAAACCGTTTTACCACTGTATGGAGTATGA
>Glyma18g06190.2 sequence type=predicted peptide gene model=Glyma18g06190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAHPRLTNSLCSSPLRNLNPNPKLIPLCTCSCRPFSSQSLILHSHPLFLAKPKPLLRFARRTGPPLVLAAVGQAEPELPQTSAPTVIPEDEEDLPSKSQQQLRNRVVFGLGIGISVGGIVLAGGWVFAVALAAAVFTGAREYFELVRSHGITEGMTPPPRYVSRVCSVICALMPLFVMYRGHIDVSVTSAAFVLATALLLQRGSPRFAQLSSAIFGLFYCGYLPSFWLKLRCGLAAPALNTRIGATWPILLGGQAHWTVGLVATLITISSVIAADTFAFLGGKAFGRTPLTSISPKKTWEGTIIGFCGCIVTSAVLSKIFSWPIPLSSAIGLGVLSFFGSVFGDLTESMIKRDAGVKDSGTLIPGHGGVLDRADSYVFTGALAYNFIKTVLPLYGV* >Glyma18g06190.3 sequence type=predicted peptide gene model=Glyma18g06190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAHPRLTNSLCSSPLRNLNPNPKLIPLCTCSCRPFSSQSLILHSHPLFLAKPKPLLRFARRTGPPLVLAAVGQAEPELPQTSAPTVIPEDEEDLPSKSQQQLRNRVVFGLGIGISVGGIVLAGGWVFAVALAAAVFTGAREYFELVRSHGITEGMTPPPRYVSRVCSVICALMPLFVMYRGHIDVSVTSAAFVLATALLLQRGSPRFAQLSSAIFGLFYCGYLPSFWLKLRCGLAAPALNTRIGATWPILLGGQAHWTVGLVATLITISSVIAADTFAFLGGKAFGRTPLTSISPKKTWEGTIIGFCGCIVTSAVLSKIFSWPIPLSSAIGLGVLSFFGSVFGDLTESMIKRDAGVKDSGTLIPGHGGVLDRADSYVFTGALAYNFIKTVLPLYGV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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