Glyma18g06145 - SoyBase

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Report for Sequence Feature Glyma18g06145

Feature Type:	gene_model
Chromosome:	Gm18
Start:	4732954
stop:	4744317
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g06145

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G58370	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr5:23593358-23595645 FORWARD LENGTH=465	SoyBase	E_val: 3.00E-166	ISS
GO:0000917	GO-bp	Annotation by Michelle Graham. GO Biological Process: barrier septum assembly	SoyBase	N/A	ISS
GO:0019243	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
PTHR11649	Panther	MSS1/TRME-RELATED GTP-BINDING PROTEIN	JGI		ISS
PTHR11649:SF46	Panther		JGI		ISS
PF01926	PFAM	GTPase of unknown function	JGI		ISS
UniRef100_B9RVE2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GTP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RVE2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E88F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E88F related cluster n=1 Tax=unknown RepID=UPI000233E88F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g06145

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g06145 not represented in the dataset	Glyma18g06145 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g06145

Paralog	Evidence	Comments
Glyma11g30090	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g06145 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g054700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g06145

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g06145

Limit To All Plant Sequences

>Glyma18g06145.2   sequence type=transcript   gene model=Glyma18g06145   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACAGCGCCTCCTCCTGTGTCCCAAGATCACTGCCTCCACATTCCACCACAACACTCGAAGCTCCTATCTCAAATATTAACCGAAAGTTAAGAACTTTCGAACATTCCATGACGAGGTTAAGTTTCTAAACCTTATCTTCAGGGAACTCAAACCGTGTCTGACCCTGTTATTTGCTTCGTTGCACATAAAATTCATGTGGGGTGTTGATTTTAGTGTTTTTTGAGAAAAAAAGTTTAACTGATTTTAGCATTGTTCAAAATGCCTTCTGAGGATAGTTTAAGGCAAAGGCTAAAAAAGAAGGCTACTAAACCTGTAGTAAGCACTTCTAGGAACTCTATTAGAACTAAGAAGAATGAAAATTCTTTTGAGAAAAATGGGGTTTGTGATAGAGGAAATGGGTCTGAGGGGAAGTTGAAGAAAAGGGTGAAGGTTAAAGGAATGCAATGTGGTGGAGAAGTTGAGGAGAGGGGAAAGTTGAGGACTTTGGATTCTGGTGGGAAGAAGAAGAGGGTATATGCTAAGGAGGGATGGGATAAAAATGTGAAGTTAGAGAATGGTGTGGAAACATCTAAGAAGAAGAGAACTTTGATTAGGAATGGTGAGAAGCGAGTGAAAGATGAGCCTGTTGAAGGGAACACAGGCCACCTTACAATGCGGGGTCCCAGTAAGTCAATGAATGCCGGATTGAAGGTGAAGCAATCGACTCACATGAGGAAGGAAAGGAAGGAAGATGTTGTGTTGGTCACTGATAAACAGAAAGGCAAGGCGAAGGAGGTGGGGAAAATTGGATTGGTTGGGGCAGAAGATCAAGGAAGCCGTTCGGTGAAGAGAGGTAGAGAAAATAAAACTGAATTGAGCAAAGGGAAAAACCAAGTAGTTGTATCTCGTTCAAGTTTTGCCAAGAAAAAAGCCAGAGATAAAACAGGGTTGGATGATGATGATGCTGAGATGCTAGATGATCGCCCAAAGAAGAAGAAAAGGGTGATAAAGATTGACCCACATGATATCTCAAACAAGAGACTAGATGATGGCATTGGTATTAATGGAAGTAAAGAGGAGAAGAAAAATGAAAAGGAGTCCGAGAAAGAGCCTAAGATGTCCAAGAATGCCCAGTTCCGTGCAATACAGCCTAGCCCTTTAATACTTTCCTTTGTGGAGAAAAATCTTTTGGGAAGGAGACGCATGATTGACTTAAAAAGGGCAGGTTACAATATAGATCTTTCTGCACCCTTAGATAATATTCCCTTCTCTAGCAGTTCAGAAAGAGAGAAAATTGAAGAAAATATTTTTAGGAATAAATTGGAATTTTTTGCTGCTGCAAAGGTCTCATCATCATTTCCAACTCCTAATCTTCCAGAGATTGCATTTGCTGGAAGGTCAAATGTCGGGAAGTCATCTCTTCTTAATGCACTGACTAGACAATGGGGGGTTGTGCGGACATCAGACAAGCCTGGCCTTACACAGACAATCAACTTCTTCCAGCTGGGAACAAAGCATTGCTTAGTTGATTTGCCAGGATATGGATTTGCTTATGCAAAAGAAGAAGTGAAAGAATCTTGGGAGGAGCTTGTGAAGGAGTATGTGTCCACAAGAGTTGGTCTCAAACGAGTATGCCTGCTGATTGATACAAAGTGGGGTATGAAACCAAGAGATCTTGAACTAATTGAATTAATGGAAAGATCAAAAACTAAATATCAGATTGTATTAACTAAGACAGATATGGTTTTTCCAATTGATGTGGCAAGACGTGCCATGCAAATTGAAGAGAACCTCTTCCAGAACAAATCTGTAGTTAAGCCTGTGATGATGGTAAGCTCAAACTCTGGAGCAGGAATTCGAAGCCTGAGAACGGCCCTAGCCAACATAACTCGATTTGCCAGAAGATTGTAGTAAGAGTTCATCTTGAACAATGTTGACGAACTGAATTTCTTTGACGTGAATCTCTCGTGAAACAACAAGGTCACACTGATGCTAGAAACTTCACCTCCACATAAGCTAGAGGAGTTGTAATTGCCAATT

Coding sequences of Glyma18g06145

Limit To All Plant Sequences

>Glyma18g06145.1   sequence type=CDS   gene model=Glyma18g06145   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTCTGAGGATAGTTTAAGGCAAAGGCTAAAAAAGAAGGCTACTAAACCTGTAGTAAGCACTTCTAGGAACTCTATTAGAACTAAGAAGAATGAAAATTCTTTTGAGAAAAATGGGGTTTGTGATAGAGGAAATGGGTCTGAGGGGAAGTTGAAGAAAAGGGTGAAGGTTAAAGGAATGCAATGTGGTGGAGAAGTTGAGGAGAGGGGAAAGTTGAGGACTTTGGATTCTGGTGGGAAGAAGAAGAGGGTATATGCTAAGGAGGGATGGGATAAAAATGTGAAGTTAGAGAATGGTGTGGAAACATCTAAGAAGAAGAGAACTTTGATTAGGAATGGTGAGAAGCGAGTGAAAGATGAGCCTGTTGAAGGGAACACAGGCCACCTTACAATGCGGGGTCCCAGTAAGTCAATGAATGCCGGATTGAAGGTGAAGCAATCGACTCACATGAGGAAGGAAAGGAAGGAAGATGTTGTGTTGGTCACTGATAAACAGAAAGGCAAGGCGAAGGAGGTGGGGAAAATTGGATTGGTTGGGGCAGAAGATCAAGGAAGCCGTTCGGTGAAGAGAGGTAGAGAAAATAAAACTGAATTGAGCAAAGGGAAAAACCAAGTAGTTGTATCTCGTTCAAGTTTTGCCAAGAAAAAAGCCAGAGATAAAACAGGGTTGGATGATGATGATGCTGAGATGCTAGATGATCGCCCAAAGAAGAAGAAAAGGGTGATAAAGATTGACCCACATGATATCTCAAACAAGAGACTAGATGATGGCATTGGTATTAATGGAAGTAAAGAGGAGAAGAAAAATGAAAAGGAGTCCGAGAAAGAGCCTAAGATGTCCAAGAATGCCCAGTTCCGTGCAATACAGCCTAGCCCTTTAATACTTTCCTTTGTGGAGAAAAATCTTTTGGGAAGGAGACGCATGATTGACTTAAAAAGGGCAGGTTACAATATAGATCTTTCTGCACCCTTAGATAATATTCCCTTCTCTAGCAGTTCAGAAAGAGAGAAAATTGAAGAAAATATTTTTAGGAATAAATTGGAATTTTTTGCTGCTGCAAAGGTCTCATCATCATTTCCAACTCCTAATCTTCCAGAGATTGCATTTGCTGGAAGGTCAAATGTCGGGAAGTCATCTCTTCTTAATGCACTGACTAGACAATGGGGGGTTGTGCGGACATCAGACAAGCCTGGCCTTACACAGACAATCAACTTCTTCCAGCTGGGAACAAAGCATTGCTTAGTTGATTTGCCAGGATATGGATTTGCTTATGCAAAAGAAGAAGTGAAAGAATCTTGGGAGGAGCTTGTGAAGGAGTATGTGTCCACAAGAGTTGGTCTCAAACGAGTATGCCTGCTGATTGATACAAAGTGGGGTATGAAACCAAGAGATCTTGAACTAATTGAATTAATGGAAAGATCAAAAACTAAATATCAGATTGTATTAACTAAGACAGATATGGTTTTTCCAATTGATGTGGCAAGACGTGCCATGCAAATTGAAGAGAACCTCTTCCAGAACAAATCTGTAGTTAAGCCTGTGATGATGGTAAGCTCAAACTCTGGAGCAGGAATTCGAAGCCTGAGAACGGCCCTAGCCAACATAACTCGATTTGCCAGAAGATTGTAG

>Glyma18g06145.2   sequence type=CDS   gene model=Glyma18g06145   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTCTGAGGATAGTTTAAGGCAAAGGCTAAAAAAGAAGGCTACTAAACCTGTAGTAAGCACTTCTAGGAACTCTATTAGAACTAAGAAGAATGAAAATTCTTTTGAGAAAAATGGGGTTTGTGATAGAGGAAATGGGTCTGAGGGGAAGTTGAAGAAAAGGGTGAAGGTTAAAGGAATGCAATGTGGTGGAGAAGTTGAGGAGAGGGGAAAGTTGAGGACTTTGGATTCTGGTGGGAAGAAGAAGAGGGTATATGCTAAGGAGGGATGGGATAAAAATGTGAAGTTAGAGAATGGTGTGGAAACATCTAAGAAGAAGAGAACTTTGATTAGGAATGGTGAGAAGCGAGTGAAAGATGAGCCTGTTGAAGGGAACACAGGCCACCTTACAATGCGGGGTCCCAGTAAGTCAATGAATGCCGGATTGAAGGTGAAGCAATCGACTCACATGAGGAAGGAAAGGAAGGAAGATGTTGTGTTGGTCACTGATAAACAGAAAGGCAAGGCGAAGGAGGTGGGGAAAATTGGATTGGTTGGGGCAGAAGATCAAGGAAGCCGTTCGGTGAAGAGAGGTAGAGAAAATAAAACTGAATTGAGCAAAGGGAAAAACCAAGTAGTTGTATCTCGTTCAAGTTTTGCCAAGAAAAAAGCCAGAGATAAAACAGGGTTGGATGATGATGATGCTGAGATGCTAGATGATCGCCCAAAGAAGAAGAAAAGGGTGATAAAGATTGACCCACATGATATCTCAAACAAGAGACTAGATGATGGCATTGGTATTAATGGAAGTAAAGAGGAGAAGAAAAATGAAAAGGAGTCCGAGAAAGAGCCTAAGATGTCCAAGAATGCCCAGTTCCGTGCAATACAGCCTAGCCCTTTAATACTTTCCTTTGTGGAGAAAAATCTTTTGGGAAGGAGACGCATGATTGACTTAAAAAGGGCAGGTTACAATATAGATCTTTCTGCACCCTTAGATAATATTCCCTTCTCTAGCAGTTCAGAAAGAGAGAAAATTGAAGAAAATATTTTTAGGAATAAATTGGAATTTTTTGCTGCTGCAAAGGTCTCATCATCATTTCCAACTCCTAATCTTCCAGAGATTGCATTTGCTGGAAGGTCAAATGTCGGGAAGTCATCTCTTCTTAATGCACTGACTAGACAATGGGGGGTTGTGCGGACATCAGACAAGCCTGGCCTTACACAGACAATCAACTTCTTCCAGCTGGGAACAAAGCATTGCTTAGTTGATTTGCCAGGATATGGATTTGCTTATGCAAAAGAAGAAGTGAAAGAATCTTGGGAGGAGCTTGTGAAGGAGTATGTGTCCACAAGAGTTGGTCTCAAACGAGTATGCCTGCTGATTGATACAAAGTGGGGTATGAAACCAAGAGATCTTGAACTAATTGAATTAATGGAAAGATCAAAAACTAAATATCAGATTGTATTAACTAAGACAGATATGGTTTTTCCAATTGATGTGGCAAGACGTGCCATGCAAATTGAAGAGAACCTCTTCCAGAACAAATCTGTAGTTAAGCCTGTGATGATGGTAAGCTCAAACTCTGGAGCAGGAATTCGAAGCCTGAGAACGGCCCTAGCCAACATAACTCGATTTGCCAGAAGATTGTAG

Predicted protein sequences of Glyma18g06145

Limit To All Plant Sequences

>Glyma18g06145.1   sequence type=predicted peptide   gene model=Glyma18g06145   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSEDSLRQRLKKKATKPVVSTSRNSIRTKKNENSFEKNGVCDRGNGSEGKLKKRVKVKGMQCGGEVEERGKLRTLDSGGKKKRVYAKEGWDKNVKLENGVETSKKKRTLIRNGEKRVKDEPVEGNTGHLTMRGPSKSMNAGLKVKQSTHMRKERKEDVVLVTDKQKGKAKEVGKIGLVGAEDQGSRSVKRGRENKTELSKGKNQVVVSRSSFAKKKARDKTGLDDDDAEMLDDRPKKKKRVIKIDPHDISNKRLDDGIGINGSKEEKKNEKESEKEPKMSKNAQFRAIQPSPLILSFVEKNLLGRRRMIDLKRAGYNIDLSAPLDNIPFSSSSEREKIEENIFRNKLEFFAAAKVSSSFPTPNLPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKPGLTQTINFFQLGTKHCLVDLPGYGFAYAKEEVKESWEELVKEYVSTRVGLKRVCLLIDTKWGMKPRDLELIELMERSKTKYQIVLTKTDMVFPIDVARRAMQIEENLFQNKSVVKPVMMVSSNSGAGIRSLRTALANITRFARRL*

>Glyma18g06145.2   sequence type=predicted peptide   gene model=Glyma18g06145   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSEDSLRQRLKKKATKPVVSTSRNSIRTKKNENSFEKNGVCDRGNGSEGKLKKRVKVKGMQCGGEVEERGKLRTLDSGGKKKRVYAKEGWDKNVKLENGVETSKKKRTLIRNGEKRVKDEPVEGNTGHLTMRGPSKSMNAGLKVKQSTHMRKERKEDVVLVTDKQKGKAKEVGKIGLVGAEDQGSRSVKRGRENKTELSKGKNQVVVSRSSFAKKKARDKTGLDDDDAEMLDDRPKKKKRVIKIDPHDISNKRLDDGIGINGSKEEKKNEKESEKEPKMSKNAQFRAIQPSPLILSFVEKNLLGRRRMIDLKRAGYNIDLSAPLDNIPFSSSSEREKIEENIFRNKLEFFAAAKVSSSFPTPNLPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKPGLTQTINFFQLGTKHCLVDLPGYGFAYAKEEVKESWEELVKEYVSTRVGLKRVCLLIDTKWGMKPRDLELIELMERSKTKYQIVLTKTDMVFPIDVARRAMQIEENLFQNKSVVKPVMMVSSNSGAGIRSLRTALANITRFARRL*

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