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Report for Sequence Feature Glyma18g06130

Feature Type:gene_model
Chromosome:Gm18
Start:4728596
stop:4730894
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g06130
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G30360AT Annotation by Michelle Graham. TAIR10: SOS3-interacting protein 4 | chr2:12937265-12938572 REVERSE LENGTH=435 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009268GO-bp Annotation by Michelle Graham. GO Biological Process: response to pH SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009620GO-bp Annotation by Michelle Graham. GO Biological Process: response to fungus SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0010118GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal movement SoyBaseN/AISS
GO:0019722GO-bp Annotation by Michelle Graham. GO Biological Process: calcium-mediated signaling SoyBaseN/AISS
GO:0035556GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0042802GO-mf Annotation by Michelle Graham. GO Molecular Function: identical protein binding SoyBaseN/AISS
KOG0583 KOG Serine/threonine protein kinase JGI ISS
PTHR24343Panther SERINE/THREONINE KINASE JGI ISS
PTHR24343:SF45Panther SERINE/THREONINE-PROTEIN KINASE PTK1,2/STK1,2 JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF03822PFAM NAF domain JGI ISS
UniRef100_B9RVE0UniRef Annotation by Michelle Graham. Most informative UniRef hit: CBL-interacting serine/threonine-protein kinase, putative n=1 Tax=Ricinus communis RepID=B9RVE0_RICCO SoyBaseE_val: 0ISS
UniRef100_I1MZS1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MZS1_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g06130
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g06130
ParalogEvidenceComments
Glyma11g30110 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g06130 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g054600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g06130
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g06130
>Glyma18g06130.1   sequence type=CDS   gene model=Glyma18g06130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGGAGATCGACCAGGCGGCGGCGGCGGCGGAGGAAACCGCCCTGTTCGGAAAATACGAGCTGGGCCGCGTCCTCGGCTGCGGTGCCTTCGCCAAAGTCCACTACGCGCGCAACGTGCAAACGGGGCAGAGCGTGGCCGTGAAAATCATCAACAAGAAGAAACTCGCCGGAACCGGCCTCGTCGGAAACGTGAAGCGCGAAATCACGATCATGAGCAAGCTCCACCACCCCTACATAGTGCGCCTCCACGAAGTCCTCGCCACCAAGACCAAAATCTTCTTCATCATGGACTTCGTCCGCGGCGGCGAGTTATTCGCGAAAATCTCCAAGGGTCGCTTCGCCGAGGATCTCAGCCGCAAATACTTTCATCAATTGATCTCCGCCGTCGGGTACTGCCACTCGCGCGGCGTTTTCCACCGCGACCTCAAGCCGGAGAATCTCCTCCTCGACGAGAACGGCGATTTGAGGGTCTCGGATTTCGGGTTGAGTGCGGTTCGAGATCAGATCCGGCCCGATGGGCTGCTCCACACGCTTTGCGGAACCCCTGCTTACGTGGCACCTGAGATTTTAGGCAAAAAAGGTTACGATGGTGCCAAGGTTGATGTGTGGTCATGCGGCGTCGTTCTGTTCGTGCTCGCCGCGGGATACTTACCGTTCAACGACCCGAATTTGATGGTAATGTATAAGAAAATTTACAAAGGCGAGTTCCGGTGTCCGCGGTGGATGTCGCCGGAGCTCCGGCGATTCTTATCGAAGTTGCTCGACACGAACCCAGAAACGAGGATCACGGTTGATGGCATGACGCGGGACCCGTGGTTCAAAAAAGGGTACAAAGAATTAAAATTTCACGAAGAGGATTACCATGCAACCGGGTCGGGTTCGTTTTTCGGGCCGAAGGACGAGAGGGTGGTGGATTTGAACGCTTTTGATTTGATATGTTTTTCTTCGGGGTTGGATTTGTCGGGGATGTTTGGCGGGGAGTGGGGGGAGAGGTTGGTGACGCGGGAGCCGCCGGAGAGGGTTTTGGAGGCGGCGGAGGATGCGGGGGCGGCGGCGGGGATGGCGGTGCGGTGGAAGAAGGAGTGTGGGGTGGAGTTGGAAGGGATGAATGGGAGGTTTGGGATTGGGGTGGAGGTTTACCGGCTCACGGCGGAGCTCGCGGTGGTGGAGGTAAGGAAGAGGGGCGGCGACGCCGTGGCCGCGGCAGTGAGGGGTGTGTGGGAGGAGAGGTTGAAGCCTTTGTTGCTTGGGGGTGCAACCACGTCGTATAGTAGTGAGGAGGAACAACAACAACAACATCAAGAAGAAGAAGAACAACAAGAACTTGAGTCGCAGGTTGCCGGTGACTGA
Predicted protein sequences of Glyma18g06130
>Glyma18g06130.1   sequence type=predicted peptide   gene model=Glyma18g06130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPEIDQAAAAAEETALFGKYELGRVLGCGAFAKVHYARNVQTGQSVAVKIINKKKLAGTGLVGNVKREITIMSKLHHPYIVRLHEVLATKTKIFFIMDFVRGGELFAKISKGRFAEDLSRKYFHQLISAVGYCHSRGVFHRDLKPENLLLDENGDLRVSDFGLSAVRDQIRPDGLLHTLCGTPAYVAPEILGKKGYDGAKVDVWSCGVVLFVLAAGYLPFNDPNLMVMYKKIYKGEFRCPRWMSPELRRFLSKLLDTNPETRITVDGMTRDPWFKKGYKELKFHEEDYHATGSGSFFGPKDERVVDLNAFDLICFSSGLDLSGMFGGEWGERLVTREPPERVLEAAEDAGAAAGMAVRWKKECGVELEGMNGRFGIGVEVYRLTAELAVVEVRKRGGDAVAAAVRGVWEERLKPLLLGGATTSYSSEEEQQQQHQEEEEQQELESQVAGD*






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