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Report for Sequence Feature Glyma18g06076

Feature Type:gene_model
Chromosome:Gm18
Start:4674999
stop:4680585
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g06076
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G58350AT Annotation by Michelle Graham. TAIR10: with no lysine (K) kinase 4 | chr5:23585505-23587681 FORWARD LENGTH=571 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0010260GO-bp Annotation by Michelle Graham. GO Biological Process: organ senescence SoyBaseN/AISS
GO:0016036GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation SoyBaseN/AISS
GO:0019375GO-bp Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process SoyBaseN/AISS
GO:0042631GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation SoyBaseN/AISS
GO:0046777GO-bp Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG0584 KOG Serine/threonine protein kinase JGI ISS
PTHR13902Panther SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-RELATED JGI ISS
PTHR13902:SF35Panther WNK5 (ARABIDOPSIS WNK KINASE 5) JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_G7K0S2UniRef Annotation by Michelle Graham. Most informative UniRef hit: With no lysine kinase n=1 Tax=Medicago truncatula RepID=G7K0S2_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233E2DCUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E2DC related cluster n=1 Tax=unknown RepID=UPI000233E2DC SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g06076
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g06076 not represented in the dataset
Glyma18g06076 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g06076
ParalogEvidenceComments
Glyma11g26210 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g06076 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g054100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g06076
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g06076
>Glyma18g06076.1   sequence type=CDS   gene model=Glyma18g06076   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATTCCAATAAAAGGTGTAAGGAGGATGGCAAAGCTGAGCCTCGTTACATCGAAACCGACCCAACTGGTAGATATGCTCGGGTTGGAGATATTCTAGGAAAAGGGGCAATGAAGACAGTGTATAAAGCAATTGATGAGGTACTTGGAATAGAAGTAGCATGGAGCCAGGTCAAACTCAACGAGGCACTTCGCAAACCAGAAGACTTGGAGCGGCTTTATTTAGAGGTTCATCTCCTCAGCACTCTCAAGCACCAATCCATCATGAGATTCTACACGTCTTGGATTGATGTTGACAACAAGACCTTCAATTTCATTACAGAAATGTTTACTTCAGGGACACTGAGAGAATACAGGAAGAAATACAAGCACATAGGCCTACAAGCAATAAAGAGTTGGACTCGCCTAATCTTACAGGGTCTTGTTTATCTACATGAACATGATCCTCCAGTAATTCATAGGGACCTCAAATGTGATAACATTTTTGTCAATGGCCATCTTGGACAAGTGAAAATTGGTGACCTGGGTCTAGCAGCAATTCTCCATGGTTCCCAACCAGCTCACAGTGTTATAGGCACCCCAGAGTTCATGGCACCAGAATTATATGAAGAAGAATACAATGAACTTGTTGATGTGTACTCATTTGGCATGTGTGTTCTGGAAATGCTTACATCTGATTATCCATATAGTGAATGTGCTAACCCTGCACAGATATACAAGAAAGTGACATCGGGGAAGCTACCGGCATCATTTTTCAGGATTGAAGACACAGAAGCACAAAGGTTTATTGGCAAGTGTCTAATAACTGCAGCAAAGAGACCATCAGCTAAAGAATTGTTGAATGATCCATTTCTTTTGTCTGATGATGCATCATCCATGACAAAGATCGGAATTCAGAAACCCTTTTTAAATTACAATGAAATGGAAAAGCTTCAATTGGATGATGTTTCACCTAGGACTGAAATGTCAATAACTGGGAAGCTAAATCCAGAACATGATACTATCTTTCTCAAAGTGCAAATTTCCGACAAGGATGGTTCTTGTAGGAATGTATACTTTCCTTTTGACATATACACAGACACTCCCATTGATGTTGCAATGGAGATGGTGAAGGAATTGGAGATCACAGATTTGAAGCCTTCTGATATTGCAAATATGATTGAAGGAGAGATATCTGTGCTGCTGCCAAATAAGAGGAATAGTAACTGTTCAGTTATCACGATGACGACGACAACGAATCATCATTTCCACTCTGCCTCTTCTCGTTCATCATCCCAAGGATCAATATCAGGCTCAGACAGTAGAGCTGATGACTTATTGAATGGAGATTATTGGCTCCATGGTGATGTACTTGATGATGCCAGTTCAATATGCTCCTCACATGGGACATATTCCAACTCAAACTTTTGTTCAGTGGATGAGCAGGAGGAAAACCATAAGGCTTCTACAAGAAAAGATAAACATCTCATCATAAAGAGTCACATGTGCACAAGATTTTCCCCTAATGAAGACCCCATCACTTTGAACCAGTGCAAAGTTTTGGCAGGACCACAAGCACCTTCTACTAGCAAAAACAAGAGGATGATGGACAATCGTAGACTAACAAGGAACAAGTCATTGATTGATACAAGGAGCCAGCTACTACACAGATCACTGGTTGAGGAGGTGAACAAAAGAAGGCTATTCAACACAGTTGGAGCCGTGGAAAATATTGGATTTGTGACACCTTATGAGGTTACCAACAAAAAGTCACATCCAGCATGCGGTGCTTTTGATGTGAACTCTTCTAGAAGTAGCAAGAGAGAAAACTTTAATAGAGAGAAATTTTTTTAG
Predicted protein sequences of Glyma18g06076
>Glyma18g06076.1   sequence type=predicted peptide   gene model=Glyma18g06076   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYSNKRCKEDGKAEPRYIETDPTGRYARVGDILGKGAMKTVYKAIDEVLGIEVAWSQVKLNEALRKPEDLERLYLEVHLLSTLKHQSIMRFYTSWIDVDNKTFNFITEMFTSGTLREYRKKYKHIGLQAIKSWTRLILQGLVYLHEHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSQPAHSVIGTPEFMAPELYEEEYNELVDVYSFGMCVLEMLTSDYPYSECANPAQIYKKVTSGKLPASFFRIEDTEAQRFIGKCLITAAKRPSAKELLNDPFLLSDDASSMTKIGIQKPFLNYNEMEKLQLDDVSPRTEMSITGKLNPEHDTIFLKVQISDKDGSCRNVYFPFDIYTDTPIDVAMEMVKELEITDLKPSDIANMIEGEISVLLPNKRNSNCSVITMTTTTNHHFHSASSRSSSQGSISGSDSRADDLLNGDYWLHGDVLDDASSICSSHGTYSNSNFCSVDEQEENHKASTRKDKHLIIKSHMCTRFSPNEDPITLNQCKVLAGPQAPSTSKNKRMMDNRRLTRNKSLIDTRSQLLHRSLVEEVNKRRLFNTVGAVENIGFVTPYEVTNKKSHPACGAFDVNSSRSSKRENFNREKFF*






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