SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G06900 | AT | Annotation by Michelle Graham. TAIR10: Insulinase (Peptidase family M16) family protein | chr1:2115155-2120635 REVERSE LENGTH=1024 | SoyBase | E_val: 0 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004222 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| KOG0959 | KOG | N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily | JGI | ISS | |
| PTHR11851 | Panther | METALLOPROTEASE | JGI | ISS | |
| PTHR11851:SF66 | Panther | N-ARGININE DIBASIC CONVERTASE-RELATED | JGI | ISS | |
| PF00675 | PFAM | Insulinase (Peptidase family M16) | JGI | ISS | |
| PF05193 | PFAM | Peptidase M16 inactive domain | JGI | ISS | |
| UniRef100_D7KG76 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Metalloendopeptidase n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KG76_ARALL | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MZR2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MZR2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma18g06030 not represented in the dataset |
Glyma18g06030 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g26365 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g053700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g06030.1 sequence type=CDS gene model=Glyma18g06030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCATAGACTCAAGGGTACTTTTTCTCCCTTACCAAAGAAGAACAAGAGTGGGCTTGCAAGTTCCACATCCCTTCCCAATCAAAACCCGCACAACAAGTACGGCGCTTTGCCTTCGGCAGCTGAGACTTACAACTATCGCACAAAAAAAACCCTTTGCTGCCAAACCACGCTCACTTTCACCAATTCATTATTCCCATTTTCTCCAGAACCACAAGAAGAAGAAGTTTGTAACAATAATGGGAATGAAGGGTGCTCCCGCCACTCTCTCCGACGACGACGTCGTTCTCAAGTCCCCAAACGACCGTCGTTTGTACCGCCTCATCCACCTCCCCAACGGCCTTCGCGCCCTGCTCGTTCACGATCCCGAGATTTACCCTGAGGGGCCTCCGAAGCATGTTTCAAACGAGGACGAAGTTGAAGAAGAAGATGATGATGATGAAGAAGAAGACGAGGATGAAGAAGAAGAAGAAGAAGATGAGGATGATGATGATGATGATGAGGAAGAAGAAGAAGGAAATGAAATGGATGGGGTGAAGGGTGGTGCTGCTGCTGCTCAGAGCAAAAAGGCTGCAGCAGCTATGTGTGTAGGAATGGGCAGCTTCTCTGACCCGTATGAAGCGCAGGGACTAGCGCATTTTTTAGAACACATGCTCTTCATGGGGAGTGATGAATTTCCAGATGAAAATGAGTATGATAGCTATTTGTCCAAGCATGGTGGCTCATCAAATGCTTACACAGAAACTGAATATACCTGCTACCATTTTGAAGTGAAGCGAGAGTTTCTGAAGGGTGCCTTGAAAAGATTTTCTCAGTTCTTTATTTCACCTCTTGTAAAGATGGAGGCAATGGAGCGAGAAGTACTTGCAGTAGATTCAGAGTTTAACCAGGTTTTACAAAGTGATGCTTGCCGTCTTCAACAACTTCAGTGCCATACTGCAGCTCATAATCATCCTTTAAATAGATTCTTTTGGGGGAATAAAAAGAGCTTGGTTGATGCAATGGAGAAGGGTATTAATTTGCGGGAGCAAATATTGAAATTATACAAGGAATATTATCACGGTGGATTGATGAAGCTTGTTGTTATTGGTGGAGAGTCTCTGGATGTGCTTGAGAGTTGGGTTGTGGAACTGTTTGGCGCTGTCAAGAAAGGTCAAGCAAACCCAGTGTTCACAGTGGAAGGTCCTATCTGGAAATCTGGTAAAGTTTATCGGCTAGAAGCTGTCAAAGATGTTCATATCCTTGACTTATCATGGACACTTCCCTGTCTACACCAAGAGTATTTAAAGAAGCCAGAGGATTATTTAGCTCATCTCCTTGGGCATGAGGGCAGAGGAAGCTTGCTCTCCTTTCTCAAGAGCAGAGGATGGGCTACATCTCTATCTGCAGGTGTTGGGGAAGAAGGAATTTATCGGTCATCTATAGCTTATGTCTTCGTCATGTCCATACACCTCACTGACTCTGGTGTAGAAAAGATCTTTGATATCATTGGCTTTGTCTATCAATACCTTAAGTTGTTGAGCCAAGATTCTCCACAAGAATGGATATTTAAGGAACTTCAGAATATTGGAAACATGGATTTCCGATTTGCGGAAGAGCAGCCTCCTGATGATTATGCTGCTGAGCTTGCAGAAAATATGCACTTTTATCCACCAGAACATGTAATTTATGGTGACTACGTGTTCAAGACATGGGATAAACAATTGTTAAAACAAGTTCTTGGTTTCTTCATTCCTGAAAACATGAGGGTAGATGTTGTTTCAAAGTCGTTCCTTAAGTCAGAAGATTTCCAATATGAACCTTGGTTTGGTTCACGTTACGTTGAGGAAGATATTGGTCAAAGTTTCATGGAGTTATGGAGAAATCCTCCAGAAATTGATGTCTCACTGCATCTTCCTTCCAAGAATGAGTTTATTCCTAGTGACTTTTCTATACGTGCTAGTGACACCTGTGTTGATGATTTTGCAAATTCAACATCTCCTAGATGTATAATTGATGAAGCATTAATAAAATTATGGTACAAACCGGATAGCACTTTCAAAGTTCCTCGTGCCAATACATATTTTCGAATTACCATGAAGGGTGGCTATGCTGACGTGAAGAGTTGTGTATTATCCGAATTGTTTATTCATCTTCTTAAAGATGAGTTGAATGAAATCACATATCAGGCTAGTATTGCCAAGTTAGAAACTTCTGTCACTTATGTTGGTGACATGCTTGAGCTGAAGGTCTATGGTTTCAATGAAAAGCTTCCTGTTTTGTTATCTAAATTCTTTTCAGTATCTAAATCTTTCGTGCCAACTGATGATCGGTTTAAGGTAATAAAAGAAGACATGAAGAGAGCTTTAAAGAACACCAACATGAAGCCTCTAAGCCATTCAACATATTTGAGATTGCAAGTTTTGTGTGAGAGTTTTTATGACGCTGATGAGAAGCTGTGTTATCTAAATGATTTGTTTCTTGATGATCTGAAGGCATTTATCCCTGGGCTTCTCTCCCAGATATACGTGGAGGGTCTATGCCATGGAAATCTGTCAAAAGAAGAAGCAATTAACATATCAAAAATATTTAAGATGAGTTTTCCAGTTAATCCGCTCCCTATTGAGTTGAGACATGCTGAGCGTGTTATTTGCCTCCCATCCAGTGCCAATTTAGTTAGAGATGTCAATGTGAAGAATAAGTCAGAAAAAAACTCAGTGGTTGAGCTTTATTTTCAAATTGATCAAGATTTTGGTCTGGGTTCAATCAAATTGAAAGCTTTAATTGATCTTTTTGATGAAATTGTGGAGGAGCCATTTTTCAATCAACTGAGGACAAAAGAGCAGCTTGGTTATGTTGTTGAATGCAGCCCGCGAGTAACATACCGTGTCTTTGGGTTTTGTTTCTGCGTCCAGTCATCTGAGTACAACCCAGTTTACTTGCAGGGTAGAATTGAAAACTTCTTAAATGGCCTGGAAGAATTGCTGGATGGACTTGATGGTGATTCCTTTGAGAATTACAAAAGTGGGTTAGTGGCAAAGCTGCTGGAGAAAGACCCTTCACTCACATATGAAAGCAATAGATTGTGGAACCAAATTGTTGAAAAAAGGTACATCTTTGACTTGTCAAAGAAAGAAGCAGAAGAATTGAAGAACATAAGTAAGCATGATATTGTTGAATGGTACAAGACTTACTTGAAACCGTCGTCTCCAAAGTGTCGGCAACTACTTATTCGGCTATGGGGTTGCAACACAGACTTGAAAGAAGCTGAAGCACTACCCAAATCTGTGCTGGCCATTACAGATCCAGCAGCTTTTAAGATGCAATCCAAGTTTTATCCAAGTTTTTGTTAA
>Glyma18g06030.1 sequence type=predicted peptide gene model=Glyma18g06030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSIDSRVLFLPYQRRTRVGLQVPHPFPIKTRTTSTALCLRQLRLTTIAQKKPFAAKPRSLSPIHYSHFLQNHKKKKFVTIMGMKGAPATLSDDDVVLKSPNDRRLYRLIHLPNGLRALLVHDPEIYPEGPPKHVSNEDEVEEEDDDDEEEDEDEEEEEEDEDDDDDDEEEEEGNEMDGVKGGAAAAQSKKAAAAMCVGMGSFSDPYEAQGLAHFLEHMLFMGSDEFPDENEYDSYLSKHGGSSNAYTETEYTCYHFEVKREFLKGALKRFSQFFISPLVKMEAMEREVLAVDSEFNQVLQSDACRLQQLQCHTAAHNHPLNRFFWGNKKSLVDAMEKGINLREQILKLYKEYYHGGLMKLVVIGGESLDVLESWVVELFGAVKKGQANPVFTVEGPIWKSGKVYRLEAVKDVHILDLSWTLPCLHQEYLKKPEDYLAHLLGHEGRGSLLSFLKSRGWATSLSAGVGEEGIYRSSIAYVFVMSIHLTDSGVEKIFDIIGFVYQYLKLLSQDSPQEWIFKELQNIGNMDFRFAEEQPPDDYAAELAENMHFYPPEHVIYGDYVFKTWDKQLLKQVLGFFIPENMRVDVVSKSFLKSEDFQYEPWFGSRYVEEDIGQSFMELWRNPPEIDVSLHLPSKNEFIPSDFSIRASDTCVDDFANSTSPRCIIDEALIKLWYKPDSTFKVPRANTYFRITMKGGYADVKSCVLSELFIHLLKDELNEITYQASIAKLETSVTYVGDMLELKVYGFNEKLPVLLSKFFSVSKSFVPTDDRFKVIKEDMKRALKNTNMKPLSHSTYLRLQVLCESFYDADEKLCYLNDLFLDDLKAFIPGLLSQIYVEGLCHGNLSKEEAINISKIFKMSFPVNPLPIELRHAERVICLPSSANLVRDVNVKNKSEKNSVVELYFQIDQDFGLGSIKLKALIDLFDEIVEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCVQSSEYNPVYLQGRIENFLNGLEELLDGLDGDSFENYKSGLVAKLLEKDPSLTYESNRLWNQIVEKRYIFDLSKKEAEELKNISKHDIVEWYKTYLKPSSPKCRQLLIRLWGCNTDLKEAEALPKSVLAITDPAAFKMQSKFYPSFC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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