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Report for Sequence Feature Glyma18g05963

Feature Type:gene_model
Chromosome:Gm18
Start:4580613
stop:4581599
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g05963
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G48670AT Annotation by Michelle Graham. TAIR10: AGAMOUS-like 80 | chr5:19738825-19739790 REVERSE LENGTH=321 SoyBaseE_val: 3.00E-38ISS
GO:0009612GO-bp Annotation by Michelle Graham. GO Biological Process: response to mechanical stimulus SoyBaseN/AISS
GO:0019722GO-bp Annotation by Michelle Graham. GO Biological Process: calcium-mediated signaling SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0043078GO-cc Annotation by Michelle Graham. GO Cellular Compartment: polar nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
KOG0014 KOG MADS box transcription factor JGI ISS
PTHR11945Panther MADS BOX PROTEIN JGI ISS
PTHR11945:SF69Panther AGL80/FEM111 (AGAMOUS-LIKE80), DNA BINDING / TRANS JGI ISS
PF00319PFAM SRF-type transcription factor (DNA-binding and dimerisation domain) JGI ISS
UniRef100_G7JM29UniRef Annotation by Michelle Graham. Most informative UniRef hit: Agamous-like MADS-box protein AGL80 n=1 Tax=Medicago truncatula RepID=G7JM29_MEDTR SoyBaseE_val: 1.00E-40ISS
UniRef100_I1MZQ7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MZQ7_SOYBN SoyBaseE_val: 3.00E-112ISS

Expression Patterns of Glyma18g05963
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g05963 not represented in the dataset
Glyma18g05963 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g05963
ParalogEvidenceComments
Glyma11g30482 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g05963 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g053200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g05963
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g05963
>Glyma18g05963.1   sequence type=CDS   gene model=Glyma18g05963   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACAGGAAAGCTGAAACTCACATTCGTAGCCAACGATTCTCAAAGAAAAACAGTATGCAAGAAAAGGAAGCAGTCACTGCTGAAGAAAACGGAGGAACTCAGCACCCTTTGTGGCATTGAAGCATGTGCTATAGTTTATGGCCCCAATGATCATCGGCCAGAGATCTGGCCATCTGAATCGGGTGTCAAAAATGTACTGGGAAAGTTCATGAACAAGCCACAATGGGAGCAAAGCAAAAAGATGATGAACCAAGAGAGTTTCATTGCACAAAGTATCATGAAGAGTAAAGACAAGTTACAGAAAGTTGTGAAGGAAAACAAGGAGATTGAAATGTCCTTGTTCATGGCTCAGTGCTTTCAGACAGGTATGTTTCAGCCTGATATCAATATGACCGCAGCTGATATGAATGTTCTTTCATCGGAGATTGAACAGAACCTGAAGGACATTGATAAAAGGATGGAAATGCTGAAAGCCAACCAGGTGACACCAAACCAACCCGATATTGAATCGTTAACATTTCAACCCCAGATAATGCAAACATCAGCATTCCAACCCCAGATTCAAATACCAGCATTCGAAACCCAGATCCAAACACAAACATACCAATCCCAGATGGAAACACCAACATTTCAACCCCAGATGCAATCACCAGCATTGTTCCAACCCCAGATACAAACTGCATCATACCAACCCCATATGCAAACACAGTCATACCATCCCCATATGCAAGCAACATCATTCCCAACCCAGATGCAAGCACCATCATACCAACCCCAGATGCAAACACCAGCATACCAACCCGATATCCAAACCCTAGCTTTCGAACCCCAGATGCAAACACCTGCACCTGAAGAGATGACACTGATGAATTATGGCTATGGGTCGGGTATGAATGCAAATCACATGCATAGGCAGAAGTTTAATGGTAATGGGTATGAGACAATAATGCCTGCATTTGGAGGTGCCAAACTCCCTCTCTAA
Predicted protein sequences of Glyma18g05963
>Glyma18g05963.1   sequence type=predicted peptide   gene model=Glyma18g05963   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATGKLKLTFVANDSQRKTVCKKRKQSLLKKTEELSTLCGIEACAIVYGPNDHRPEIWPSESGVKNVLGKFMNKPQWEQSKKMMNQESFIAQSIMKSKDKLQKVVKENKEIEMSLFMAQCFQTGMFQPDINMTAADMNVLSSEIEQNLKDIDKRMEMLKANQVTPNQPDIESLTFQPQIMQTSAFQPQIQIPAFETQIQTQTYQSQMETPTFQPQMQSPALFQPQIQTASYQPHMQTQSYHPHMQATSFPTQMQAPSYQPQMQTPAYQPDIQTLAFEPQMQTPAPEEMTLMNYGYGSGMNANHMHRQKFNGNGYETIMPAFGGAKLPL*






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