Glyma18g05880 - SoyBase

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Report for Sequence Feature Glyma18g05880

Feature Type:	gene_model
Chromosome:	Gm18
Start:	4525276
stop:	4528639
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g05880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G40620	AT	Annotation by Michelle Graham. TAIR10: Basic-leucine zipper (bZIP) transcription factor family protein \| chr2:16954804-16956872 REVERSE LENGTH=367	SoyBase	E_val: 5.00E-101	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PTHR22952	Panther	CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED	JGI		ISS
PTHR22952:SF39	Panther	ATBZIP52 (ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPE	JGI		ISS
PF00170	PFAM	bZIP transcription factor	JGI		ISS
UniRef100_G7K0T5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor RF2b n=1 Tax=Medicago truncatula RepID=G7K0T5_MEDTR	SoyBase	E_val: 9.00E-169	ISS
UniRef100_UPI000233E882	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E882 related cluster n=1 Tax=unknown RepID=UPI000233E882	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g05880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g05880

Paralog	Evidence	Comments
Glyma11g30940	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g05880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g052500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g05880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g05880

Limit To All Plant Sequences

>Glyma18g05880.2   sequence type=CDS   gene model=Glyma18g05880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACACAGACGCAAGATCCACGTTCAAACCCTAACCCTAATCCCAATGCAATGTCGGCAACGCCATCTTCCTCCTTCTTCATCCGCGCCGCCGGCGGCAACGGTCCCTCCGCCGCTCCCGTCGCCGGCTCCGGCGAGTCGCACTCGCACCACCGGAGGGCGCACTCGGAGGTCAGCTTCCGGCTGCCGGATGACATGATTGACTTGTCGCCGTCGGATCCGTTCAACGGCGGATCCTCGACGGCGAGCTTCGAGGAGATCGGATCCGAGGACGACCTGTTCTCCACCTACATTGACGTCGAGAAGCTCGGGGCTGGACGCGGCGGAAACGGATCGGATCAGAGCGGTTATGGAAATGGCGCCGGCAGCAGCTGCTACAACGACGGCGAGAAGAGTCCGAGCACCGCCGCTGCGCGGCCGAGACACCGGCACAGTAGCTCCGTCGACGGTTCCACGTCGACGAGCATGTTCGGAGAGATCATGGATGCGAAGAAAGCCATGCCTCCTGATAAGCTCGCAGAGCTTTGGAACATTGATCCAAAGCGTGCCAAAAGAATACTGGCTAATCGGCAATCTGCCGCACGTTCAAAAGAAAGAAAGGCACGCTATATACAAGAACTTGAGCGCAAAGTCCAGACCCTTCAGACTGAAGCAACAACACTTTCTGCCCAACTTACACTGTACCAGAGGGATACAACTGGTCTGAGTTCTGAAAATACCGAGCTTAAGCTCCGTCTACAAGCCATGGAGCAACAGGCACAGCTGCGTGATGTTCTTAATGATGCATTGATGAAGGAGGTTGAGAGGCTTAAGATTGCTACCGGAGAGGCATTGAACCAATCTGAGTCTTTTAACCTGGGAATGCACCAGATGCCATATGCAGGGTCAAATTTCTTTTCAATCCCACCACATTCAGGTCCTTCTGGGCACCAGAACATGCAATTGCCACCATTTGGCCACTCCCATTCCACTGTGCCGACTCATCAGCTGCAACAAACAAATTCTCACCAAATGTCAGATATATTGCAAAACGACCAGCTTGGTCGTCTGCAAGGACTCGACATTAGTAGCAAAGGAACACCCGTGGTGAAGTCTGAAGGCCCCTCAATATCTGCAAATGAGAGTAGCACCACATTTTGA

Predicted protein sequences of Glyma18g05880

Limit To All Plant Sequences

>Glyma18g05880.2   sequence type=predicted peptide   gene model=Glyma18g05880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATQTQDPRSNPNPNPNAMSATPSSSFFIRAAGGNGPSAAPVAGSGESHSHHRRAHSEVSFRLPDDMIDLSPSDPFNGGSSTASFEEIGSEDDLFSTYIDVEKLGAGRGGNGSDQSGYGNGAGSSCYNDGEKSPSTAAARPRHRHSSSVDGSTSTSMFGEIMDAKKAMPPDKLAELWNIDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSSENTELKLRLQAMEQQAQLRDVLNDALMKEVERLKIATGEALNQSESFNLGMHQMPYAGSNFFSIPPHSGPSGHQNMQLPPFGHSHSTVPTHQLQQTNSHQMSDILQNDQLGRLQGLDISSKGTPVVKSEGPSISANESSTTF*

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