SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G31360 | AT | Annotation by Michelle Graham. TAIR10: RECQ helicase L2 | chr1:11232422-11237412 FORWARD LENGTH=705 | SoyBase | E_val: 3.00E-93 | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA recombination | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016592 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mediator complex | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008026 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity | SoyBase | N/A | ISS |
| GO:0009378 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: four-way junction helicase activity | SoyBase | N/A | ISS |
| GO:0043138 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3'-5' DNA helicase activity | SoyBase | N/A | ISS |
| GO:0043140 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent 3'-5' DNA helicase activity | SoyBase | N/A | ISS |
| KOG0340 | KOG | ATP-dependent RNA helicase | JGI | ISS | |
| PTHR13710 | Panther | DNA HELICASE RECQ FAMILY MEMBER | JGI | ISS | |
| PTHR13710:SF19 | Panther | BLOOMS SYNDROME PROTEIN | JGI | ISS | |
| PF00270 | PFAM | DEAD/DEAH box helicase | JGI | ISS | |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | ISS | |
| PF00570 | PFAM | HRDC domain | JGI | ISS | |
| PF09382 | PFAM | RQC domain | JGI | ISS | |
| UniRef100_Q10ZE8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent DNA helicase RecQ n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q10ZE8_TRIEI | SoyBase | E_val: 3.00E-142 | ISS |
| UniRef100_UPI000233C821 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C821 related cluster n=1 Tax=unknown RepID=UPI000233C821 | SoyBase | E_val: 0 | ISS |
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Glyma18g05562 not represented in the dataset |
Glyma18g05562 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g31721 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g048900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g05562.1 sequence type=CDS gene model=Glyma18g05562 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCGTGGAGACCATGTGCTCCGTTCTCAAGAAATACTTTGGGTTTTCGGATTTTCGGCCTTATCAGAGAGAAGTTATTGAGAAAATTATTGAGAAAAGGGATTGTTTGGTAGTCATGGCTACTGGTAGTGGCAAGTCCTTGTGTTATCAGGTACCTCCTTTGGTTGCTAAAAAGACTGGGATAGTTGTGAGCCCTCTGATATCTTTGATGCAAGACCAGGTGATGGCTTTGAAACAACGGGGCATCAAAGCTGAATATCTTGGAAGTGCTCAGAAGGATTTCACTGTGCACTCTAAAGCTGAGCACGGTCAATTTGACATTCTGTTCATGACTCCTGAGAAGGCATGCACAGTTCCTAGCAGTTTCTGGTCCAACTTACTAAAGGCTGGAATTAGTCTTTTTGCTGTTGATGAAGCCCATTGCATATCGGAATGGGGACATGATTTTAGGGTTGAATACAAGCATTTAGACAAGCTACGTGAGGTTTTGCTAGATGTTCCTTTTGTTGGTCTAACTGCAACTGCTACTGAAAAGGTTCGATATGACATCATCAGTTCCCTGAAGCTGAATAATCCTTATGTTACAATTGGTTCATTTGATCGCACAAATCTTTTCTATGGTGTCAAACTATTGAACCGAGGACAATCTTTCATTGATGAGCTTGTGCGAGAAATTTCAAAAGAAGTCACTAATGGTGGTTCAACTATAATTTATTGCACAACAATCAAAGATGTAGAGCAGATATTCAAGTCATTTGCAGAAGCGGGCATTGAGGCAGGGATGTACCATGGCCAAATGAATGGAAAAGCTCGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAACTGCAAGTCATGGTGGCCACCATCGCCTTTGGCATGGGCATAGATAAACCTAACATTAGACAAGTGATTCACTATGGTTGCCCTAAGAGTCTAGAGTCCTACTACCAGGAAAGTGGACGATGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTATACTACACAAGAAGTGACTTTGCCAAGGGTGACTTTTATTGTGGAGATGTGAAATCAGAAAAACAAAGAAAAGCTATTATGGAGTCATTGCTTGCTGCTGAACGCTATTGTGTGCTGACAACTTGCAGAAGAAAGTTCTTGCTTGAATACTTTGGGGAAAAATTCCCAGCTGATAGATGCGGGAACTGTGATAATTGCAAAATCTCAAGGAAGGAGCGTGACATGTCAAGGGAAGCATTCCTTCTAATGGCTTGCATTCATTCATGCAGGGGCATATGGGGCCTTAATATGCCCATTGATGTCCTGCGCGGGTCTCGAGCCAAGAAAATTCTTGATGTTCAGTTTGACAAGCTTCCACTTCATGGACTGGGGAAAAATTATCCAGCAAATTGGTGGAAAGCACTTAGACATCAATTGATTTCTCAAGGTTATTTGAAGGAGATTGTTAGTGACAGATACAGAACTATTAGTGTCAGTTCAAAAGGAGAGCAATTTTTGGCGTCTTCTAGACCAGATTATCAACCTCCCTTGGTTTTGACATTGACTGCTGAAATGCTTGGAGAAGAAGATAATGGAAACACACAAGAAGCATTCAAAACTTTATCCACTTCAGAATCAGAAGGTTTTTCAGAGGCTGAGGGACAGCTCTACCAAATGCTTTTGGAAGAAAGATTAAAGCTTGCAAGAAGTGTTGGAACAGCTCCATATGCTATATGTGGTGATCAAACGATCAAGAAAATTGCATTGACAAGACCATCTACAAAAGCAAGACTAGCAAATATTGATGGTGTGAATCAGCACCTAGTAACAGAATATGGAGATGATTTTCTTCAAGTTATTCAGAAACTGTCACAAGTATTAAACCTATCATTGGATGGGGAAGCAAGAGTCGCAACAGCAAGTTTGCAAACTAATGAAGTAAGGAAAGTATCTCTAGTAACCAACAAATCCAACAAGTTGACACCGGCAAAGTTTGAAGCTTGGAAAAAGTGGCATGAAGATGGTTGTTCTATTCATGAGATTGCTAACTTTCCAGGTAGATCGGCTCCTATAAAAGAACAAAGTGTTGCTGAATATCTGCTGGAAGCTGCTCAAGAAGGATTACCTTTTGATTGGGCTAGATTTAGCGAGATGATAGGACTGACACAAGGGATCATATCAGAAATTCAGGGTGCTATTTCAAAAGTTGGATCTACAGATAAGCTGAAACCTATAAAAAATGAATTGCCAGAAGAGATAAGTTATCAGCACATCAAGACTTATTTGACAATGCGAAACTGTGGAATATCCTTAGAAGCAATTCAATCTGGAAGTAACCAGACTGGGAAAGATGACGAACCTGCACACAATGCTTCAAATTTGTCAGATCCTACTTTAGAAACATGCCACGTGGAAAGATATTGTGAAGACGGCATCTCTGCCAAAAGTTCTCTGGAAAAATGGGACCTAGAAATTGATGAGGTGCCTATTCTACCTGTCAATGGTTCGGAGGTACAGAAGCTTCCATTAGTCTGTGAGGGGGAATTCACAAACAAACGACAAAAAGTCAGTGAAACAAAGGAAGTAAATTCAACTAAATTGAAGGCTACAGAGAGTTCTGTTGTAGAGTGGTTGAAGAACCTTGATGAAGGGGCTACATTGAGCGATGTTTTGGAACACTTCAATGGATCCAGTAAAGATTCCGTGGTTGAACTGCTAAATTGCCTTCAGTCTGACTTTTCAATATATAGTAAAGGTGGCACGTATAAGATTCTGTAA
>Glyma18g05562.1 sequence type=predicted peptide gene model=Glyma18g05562 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSVETMCSVLKKYFGFSDFRPYQREVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVAKKTGIVVSPLISLMQDQVMALKQRGIKAEYLGSAQKDFTVHSKAEHGQFDILFMTPEKACTVPSSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKHLDKLREVLLDVPFVGLTATATEKVRYDIISSLKLNNPYVTIGSFDRTNLFYGVKLLNRGQSFIDELVREISKEVTNGGSTIIYCTTIKDVEQIFKSFAEAGIEAGMYHGQMNGKAREESHRLFVRDELQVMVATIAFGMGIDKPNIRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGDVKSEKQRKAIMESLLAAERYCVLTTCRRKFLLEYFGEKFPADRCGNCDNCKISRKERDMSREAFLLMACIHSCRGIWGLNMPIDVLRGSRAKKILDVQFDKLPLHGLGKNYPANWWKALRHQLISQGYLKEIVSDRYRTISVSSKGEQFLASSRPDYQPPLVLTLTAEMLGEEDNGNTQEAFKTLSTSESEGFSEAEGQLYQMLLEERLKLARSVGTAPYAICGDQTIKKIALTRPSTKARLANIDGVNQHLVTEYGDDFLQVIQKLSQVLNLSLDGEARVATASLQTNEVRKVSLVTNKSNKLTPAKFEAWKKWHEDGCSIHEIANFPGRSAPIKEQSVAEYLLEAAQEGLPFDWARFSEMIGLTQGIISEIQGAISKVGSTDKLKPIKNELPEEISYQHIKTYLTMRNCGISLEAIQSGSNQTGKDDEPAHNASNLSDPTLETCHVERYCEDGISAKSSLEKWDLEIDEVPILPVNGSEVQKLPLVCEGEFTNKRQKVSETKEVNSTKLKATESSVVEWLKNLDEGATLSDVLEHFNGSSKDSVVELLNCLQSDFSIYSKGGTYKIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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