Glyma18g05355 - SoyBase

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Report for Sequence Feature Glyma18g05355

Feature Type:	gene_model
Chromosome:	Gm18
Start:	4099438
stop:	4101309
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g05355

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02700	AT	Annotation by Michelle Graham. TAIR10: NC domain-containing protein-related \| chr3:581727-582813 REVERSE LENGTH=252	SoyBase	E_val: 2.00E-41	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR13943	Panther	HRAS-LIKE SUPPRESSOR - RELATED	JGI		ISS
PTHR13943:SF16	Panther	NC DOMAIN-CONTAINING PROTEIN	JGI		ISS
PF04970	PFAM	NC domain	JGI		ISS
UniRef100_D7KZK3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NC domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KZK3_ARALL	SoyBase	E_val: 7.00E-39	ISS
UniRef100_I1LM25	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LM25_SOYBN	SoyBase	E_val: 9.00E-70	ISS

Expression Patterns of Glyma18g05355

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g05355 not represented in the dataset	Glyma18g05355 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g05355 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g047000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g05355

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g05355

Limit To All Plant Sequences

>Glyma18g05355.2   sequence type=transcript   gene model=Glyma18g05355   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTGACGTTATGTTATCGTATCCTTTCGTAACTACCAAAGGAGCTCTTAATCGATATTCTATATAAACATTGAGTTAAATACTACTAAATATGGAGCGGTGGTGGTAATTAAATGTCAAATTGAAGAAAGTGGAAGATGCCGAAGCGGAGGAGGCGGCTCCTTGGGCTGGAATTCAAGAACCAAAACTGGAACAAGAACAATGTTGGACCGTTTTCATGTAAGTTCACCCCATCATGCTTCTCGTGAAACTCCATGCCCGAAATGTGATTACCAAACAAAGACTGAAGCCAAGGCTAGAGGAGGAACTTGCACCACTGCATCTTCTGATCCAACCGAAGCCGTCCTTTGCCGCGCTTCCTTTCTTCTCAAGAAAGGATTTGGTGGCTACCATTTGTTCAAGATCAACTGTGAGGACTTTGCAATGTACTGCAAAACAGGCTTGCTTGTAGTCACAGACATCAGTGTAGGGCAAAGTGGACAAGCAACATCTCTCTTGGCTGCTGTTGATATGATTCTGATATTGGAGTACGTTGTGATGTGACCAAAGTTTCATTGGAGAAGATACCTAAGGTGGTGAAGGAAGACTGGGTTGGAAAATTATTACATGGTCGGTCTGGAGAAATTCATCTAAACTATGTGGTCTCAGCCAATATATATCTATATAATGTGCAATCACATTTTTCAAGTTGGAGAAAAATTTATAATATATATGTCAGAGAGAGATTGGTTAATTAGAACCACATGGTCTCAGCTGACCAGGTAATAAGTGAGTTAAAGACAACTATATTATCTATGGTCTTTAAGTTTGGTTTCTGTTCTAATTTTTGTTAGCCTTCGTTAAATATTTGTAGGCAAAGTTCCTGTAACATGTAAAATTGTCATTTGTTTGTGCTTGTTCCATGTGAAAGTTAACTTATTTATTACTCTAGTCTGAATATAGTTTATTTAAGGAATGTTTGGAAGAGA

>Glyma18g05355.3   sequence type=transcript   gene model=Glyma18g05355   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTGACGTTATGTTATCGTATCCTTTCGTAACTACCAAAGGAGCTCTTAATCGATATTCTATATAAACATTGAGTTAAATACTACTAAATATGGAGCGGTGGTGGTAATTAAATGTCAAATTGAAGAAAGTGGAAGATGCCGAAGCGGAGGAGGCGGCTCCTTGGGCTGGAATTCAAGAACCAAAACTGGAACAAGAACAATGTTGGACCGTTTTCATCCAAGGCTAGAGGAGGAACTTGCACCACTGCATCTTCTGATCCAACCGAAGCCGTCCTTTGCCGCGCTTCCTTTCTTCTCAAGAAAGGATTTGGTGGCTACCATTTGTTCAAGATCAACTGTGAGGACTTTGCAATGTACTGCAAAACAGGCTTGCTTGTAGTCACAGACATCAGTGTAGGGCAAAGTGGACAAGCAACATCTCTCTTGGCTGCTGTTGATATGATTCTGATATTGGAGTACGTTGTGATGTGACCAAAGTTTCATTGGAGAAGATACCTAAGGTGGTGAAGGAAGACTGGGTTGGAAAATTATTACATGGTCGGTCTGGAGAAATTCATCTAAACTATGTGGTCTCAGCCAATATATATCTATATAATGTGCAATCACATTTTTCAAGTTGGAGAAAAATTTATAATATATATGTCAGAGAGAGATTGGTTAATTAGAACCACATGGTCTCAGCTGACCAGGTAATAAGTGAGTTAAAGACAACTATATTATCTATGGTCTTTAAGTTTGGTTTCTGTTCTAATTTTTGTTAGCCTTCGTTAAATATTTGTAGGCAAAGTTCCTGTAACATGTAAAATTGTCATTTGTTTGTGCTTGTTCCATGTGAAAGTTAACTTATTTATTACTCTAGTCTGAATATAGTTTATTTAAGGAATGTTTGGAAGAGATTTGAAGTTTCATAATCAGTTTTGTGATATAAATTAACTCTCATATAATGAACTATTATTTAAGC

Coding sequences of Glyma18g05355

Limit To All Plant Sequences

>Glyma18g05355.1   sequence type=CDS   gene model=Glyma18g05355   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGTGTTTTCCAATAAGATTGATAGGGAACAATTGAAACCCGGCGATGTCATTTATTCTTGGAGGCAAGCTTACATCATTGCTCACCACGAAACTGGAACAAGAACAATGTTGGACCGTTTTCATGTAAGTTCACCCCATCATGCTTCTCGTGAAACTCCATGCCCGAAATGTGATTACCAAACAAAGACTGAAGCCAAGGCTAGAGGAGGAACTTGCACCACTGCATCTTCTGATCCAACCGAAGCCGTCCTTTGCCGCGCTTCCTTTCTTCTCAAGAAAGGATTTGGTGGCTACCATTTGTTCAAGATCAACTGTGAGGACTTTGCAATGTACTGCAAAACAGGCTTGCTTGTAGTCACAGACATCAGTGTAGGGCAAAGTGGACAAGCAACATCTCTCTTGGCTGCTGTTGATATGATTCTGATATTGGAGTACGTTGTGATGTGA

>Glyma18g05355.2   sequence type=CDS   gene model=Glyma18g05355   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGACCGTTTTCATGTAAGTTCACCCCATCATGCTTCTCGTGAAACTCCATGCCCGAAATGTGATTACCAAACAAAGACTGAAGCCAAGGCTAGAGGAGGAACTTGCACCACTGCATCTTCTGATCCAACCGAAGCCGTCCTTTGCCGCGCTTCCTTTCTTCTCAAGAAAGGATTTGGTGGCTACCATTTGTTCAAGATCAACTGTGAGGACTTTGCAATGTACTGCAAAACAGGCTTGCTTGTAGTCACAGACATCAGTGTAGGGCAAAGTGGACAAGCAACATCTCTCTTGGCTGCTGTTGATATGATTCTGATATTGGAGTACGTTGTGATGTGA

>Glyma18g05355.3   sequence type=CDS   gene model=Glyma18g05355   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGAAGCGGAGGAGGCGGCTCCTTGGGCTGGAATTCAAGAACCAAAACTGGAACAAGAACAATGTTGGACCGTTTTCATCCAAGGCTAGAGGAGGAACTTGCACCACTGCATCTTCTGATCCAACCGAAGCCGTCCTTTGCCGCGCTTCCTTTCTTCTCAAGAAAGGATTTGGTGGCTACCATTTGTTCAAGATCAACTGTGAGGACTTTGCAATGTACTGCAAAACAGGCTTGCTTGTAGTCACAGACATCAGTGTAGGGCAAAGTGGACAAGCAACATCTCTCTTGGCTGCTGTTGATATGATTCTGATATTGGAGTACGTTGTGATGTGA

Predicted protein sequences of Glyma18g05355

Limit To All Plant Sequences

>Glyma18g05355.1   sequence type=predicted peptide   gene model=Glyma18g05355   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVFSNKIDREQLKPGDVIYSWRQAYIIAHHETGTRTMLDRFHVSSPHHASRETPCPKCDYQTKTEAKARGGTCTTASSDPTEAVLCRASFLLKKGFGGYHLFKINCEDFAMYCKTGLLVVTDISVGQSGQATSLLAAVDMILILEYVVM*

>Glyma18g05355.2   sequence type=predicted peptide   gene model=Glyma18g05355   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLDRFHVSSPHHASRETPCPKCDYQTKTEAKARGGTCTTASSDPTEAVLCRASFLLKKGFGGYHLFKINCEDFAMYCKTGLLVVTDISVGQSGQATSLLAAVDMILILEYVVM*

>Glyma18g05355.3   sequence type=predicted peptide   gene model=Glyma18g05355   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPKRRRRLLGLEFKNQNWNKNNVGPFSSKARGGTCTTASSDPTEAVLCRASFLLKKGFGGYHLFKINCEDFAMYCKTGLLVVTDISVGQSGQATSLLAAVDMILILEYVVM*

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