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Report for Sequence Feature Glyma18g05275

Feature Type:gene_model
Chromosome:Gm18
Start:3997739
stop:4007716
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g05275
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G40380AT Annotation by Michelle Graham. TAIR10: cysteine-rich RLK (RECEPTOR-like protein kinase) 42 | chr5:16152121-16155038 FORWARD LENGTH=651 SoyBaseE_val: 4.00E-118ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF580Panther JGI ISS
PF01657PFAM Domain of unknown function DUF26 JGI ISS
PF07714PFAM Protein tyrosine kinase JGI ISS
UniRef100_G7J7V5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cysteine-rich receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7J7V5_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233E712UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E712 related cluster n=1 Tax=unknown RepID=UPI000233E712 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g05275
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g05275 not represented in the dataset
Glyma18g05275 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g05275 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g046400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g05275
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g05275
>Glyma18g05275.1   sequence type=CDS   gene model=Glyma18g05275   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAACTGATGAAGGTGGTAGCCTTAACCTTGTTGGTGTTGTGGTCACGGTGGAGCTTTGAGGGTGCAGTTGGAGACCCTCAACTCTTTTTACTCAAATGGGAGTGCACCGTAGTCAAGGTACGCGATTTGTCCAACTTCCACCAAAATCTAAATGCAAGTTTGGCAGATCTTAGAGTGCAGGTGAGCAACCAAAGCAAGCACTTCGCCACGGCGCAATCAACCACCGGAACAGACCCTGTCTTTGCCATGTTCCAATGTAGGAACTACCTTTCCAACACTGACTGCACCAACTGTTTTGCTGCTGCTGCCGCCAGAATACGTAACTGTTCCACTGGAAATACTGCCCGCGTCGTTTATGACGGTTGCTTCCTCAGGTACGGCAACAATGAGTTCTTGGACCGCAGTCTCATTATTTCTAGCAGCGACACGCTTTGTGGAAATCAGACTGTAGATGAAAGCACTGCTTTTGGTACAGTTGGACGTCAAGTGCTGATGGATTTACAAAAAGCGACACCCAAAATTAGTGGCTACTTTGCAGCTACCAAGACACAAGTGGCTGGTGGTGCAATCTATGCCATTGCACAATGTGCTGAAACTCTCACACAACTCACTTGCTTGGATTGTTTGTCAATTGAACAAAGTGGCATACAAGATTGTCTTCCAAATACAAATGGTCGGGGAGTCGATCCTCAAGTGTGCTTTATGAGATACTCGGAGACACCTTTCTTTGCAGATAACCAAACCATTGATATCAGTCCCTTCTTAAAACAAGGAGGAGGAGGTTCAATTAAGAAGTGGGTTGTTATTGGTGGTGGTCTTGCAGGTGCACTCCTTGTTGTGATCCTTATTTCATCATTTCGGTGGCATAGAAGATCCCAAAGTCCAAAGAGAGTTTCTAGAAGTACCATAATGGGAGCAACTGAGCTGAAAGGTCTAACCAGGTACAAGTATAATGACTTGAAAGCTGCAACGAAAAAATTTAGTGAGAAAAATAAACTTGGAGAAGGAGGCTTTGGTGCTGTATACAAGGGGACTATGAAAAATGGGAAAGTTGTTGCAGTCAAAAAATTAATTTCAGGAAATTCCAGCAACATAGATGATGAATTTGAAAGTGAAGTAATGCTTATAAGTAATGTTCATCATAGAAATCTTGTTCGGCTCCTTGGTTGTTGCAGTAAAGGCCAAGAAAGAATCCTTGTTTATGAATACATGGCAAACGCCAGCCTAGACAAATTCTTATTTGGAAAAAGAAAAGGCTCCCTCAACTGGAAACAACGCTATGATATAATTTTGGGAACAGCAAGGGGATTGGCCTATCTACATGAGGAATTTCATGTTTCTATCATACATAGAGATATTAAGAGTGGCAATATCCTCTTGGATGAAGAACTTCAACCCAAAATATCTGATTTTGGGTTGGTGAAGCTCCTACCAGGGGACCAATCTCATCTTAGCACAAGATTTGCTGGGACATTGGGATACACAGCACCTGAGTATGCACTCCATGGTCAATTATCAGAAAAGGCTGATACATACAGCTATGGAATTGTAGTCCTAGAAATTATAAGTGGTCAAAAGAGTATTGATGCCAAGGTTGTTGATGATGATGAGGATGAATACCTTCTTCGACAAGCGTGGAAGTTGTATGAGAGAGGCATGCACGTGGAGTTAGTAGACAAAAGCTTAGACTCTAATAGCTATGATGCAGAAGAAGTGAAGAAAGTCATAAGCATTGCTTTGTTGTGCACTCAAGCATCGGCTGCAATGAGGCCAGCCTTGTCTGAAGTAGTAGTCCTACTCAGTAGTAATGACTTACTTGAGCATATGAGACCTTCGATGCCTATCTTTATTGAGTCAAATTTAAGGCCCCACAGAGATTTCTCTGCTTCGACTGGTTCCTCTACTACTTATGCTACGGCCTCCAATTCTATAGTACCGGCTCGATGA
Predicted protein sequences of Glyma18g05275
>Glyma18g05275.1   sequence type=predicted peptide   gene model=Glyma18g05275   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQLMKVVALTLLVLWSRWSFEGAVGDPQLFLLKWECTVVKVRDLSNFHQNLNASLADLRVQVSNQSKHFATAQSTTGTDPVFAMFQCRNYLSNTDCTNCFAAAAARIRNCSTGNTARVVYDGCFLRYGNNEFLDRSLIISSSDTLCGNQTVDESTAFGTVGRQVLMDLQKATPKISGYFAATKTQVAGGAIYAIAQCAETLTQLTCLDCLSIEQSGIQDCLPNTNGRGVDPQVCFMRYSETPFFADNQTIDISPFLKQGGGGSIKKWVVIGGGLAGALLVVILISSFRWHRRSQSPKRVSRSTIMGATELKGLTRYKYNDLKAATKKFSEKNKLGEGGFGAVYKGTMKNGKVVAVKKLISGNSSNIDDEFESEVMLISNVHHRNLVRLLGCCSKGQERILVYEYMANASLDKFLFGKRKGSLNWKQRYDIILGTARGLAYLHEEFHVSIIHRDIKSGNILLDEELQPKISDFGLVKLLPGDQSHLSTRFAGTLGYTAPEYALHGQLSEKADTYSYGIVVLEIISGQKSIDAKVVDDDEDEYLLRQAWKLYERGMHVELVDKSLDSNSYDAEEVKKVISIALLCTQASAAMRPALSEVVVLLSSNDLLEHMRPSMPIFIESNLRPHRDFSASTGSSTTYATASNSIVPAR*






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