SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G02720 | AT | Annotation by Michelle Graham. TAIR10: Class I glutamine amidotransferase-like superfamily protein | chr3:586336-588088 FORWARD LENGTH=388 | SoyBase | E_val: 0 | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0016798 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on glycosyl bonds | SoyBase | N/A | ISS |
| KOG2764 | KOG | Putative transcriptional regulator DJ-1 | JGI | ISS | |
| PTHR11019 | Panther | THIJ/PFPI | JGI | ISS | |
| PTHR11019:SF28 | Panther | JGI | ISS | ||
| PF01965 | PFAM | DJ-1/PfpI family | JGI | ISS | |
| UniRef100_G7J7W0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Intracellular protease n=1 Tax=Medicago truncatula RepID=G7J7W0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MZJ8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MZJ8_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma18g05220 not represented in the dataset |
Glyma18g05220 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g32754 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g045900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g05220.2 sequence type=transcript gene model=Glyma18g05220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAACTGGTGTAGATATTTCTAAATCAATTATTTCCTTTATCTTGTTTATGTACTCTGACTCTGTGAGAGAGTGTTTGTACTTTGTAGTAGCAAGCGAGCATGGCTCCGAAGAAGGTTCTTCTCCTTTGCGGGGACTTCATGGAAGACTATGAAGCCATGGTTCCATTTCAGGCATTGCAAGCCTTCGGTCTCGCCGTCGACGCCGTCTGTCCCGGAAAGAAATCCGGCGATGTCTGCCGCACCGCTGTCCATGTACTTGCCGGCGCCCAGACTTATAGTGAGACGGTTGGTCACAATTTTTCACTCAATGCAACGTTTGATGAAGTTGATGCTGCAAGCTATGATGGGTTGTGGGTGCCAGGTGGGAGGGCTCCAGAGTATCTTGCTCATGTTCCTGGTGTTGTGGAACTGGTGACCAAGTTTGTCAGTTTGGGAAAACAAATTGCTAGCATTTGTCATGGACAGTTGATTCTGGCTGCTGCTGGAGTGGTTAAAGGCCGCACGTGCACGGCTTTTCCTCCTGTTAAACCCGTGCTAGTTGCTGCTGGTGCTCATTGGGTTGAACCTGACACTGAGGCAGCAACAGTGGTAGATGGTGATCTCATTACTGCAGCTACTTATGAGGGGCACCCGGAGCTCATTCGCCATTTCGTGAAGGCATTAGGAGGAAAAATAAGTGGTTTTGATAAGAAAATCCTCTTTATTTGTGGGGATTACATGGAAGATTATGAGGTCAAGGTTCCTTTTCAGTCCCTTCAGGCTTTAGGATGCCATGTTGATGCTGTTTGCCCCTCAAAGAAGGCCGGTGACACTTGCCCAACCGCTGTTCACGATTTTGAAGGGGATCAAACTTACAGTGAGAAACCAGGACATACTTTTGCTTTAACAGCTACCTTTGATGATGTGGATCCCTCAGGTTATGACGCTCTTGTCATCCCTGGAGGTCGAGCACCTGAGTATTTGGCATTGAACGAGTCAGTCATTGCCTTGGTGAAGTATTTCTTTGAAAACAAGAAGCCAGTGGCATCTATCTGTCATGGCCAACAGATTTTATCTGCTGCTGGTGTTCTCAAGGTATTATTACTGTAAACTCAAAAGAAACACTGAGTTTGTTATGTTTCACATATGCTATCAACCAGTATTTGAATCAAGTGGCTATTGATATAGTTTGTCAAAAAAA
>Glyma18g05220.1 sequence type=CDS gene model=Glyma18g05220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCCGAAGAAGGTTCTTCTCCTTTGCGGGGACTTCATGGAAGACTATGAAGCCATGGTTCCATTTCAGGCATTGCAAGCCTTCGGTCTCGCCGTCGACGCCGTCTGTCCCGGAAAGAAATCCGGCGATGTCTGCCGCACCGCTGTCCATGTACTTGCCGGCGCCCAGACTTATAGTGAGACGGTTGGTCACAATTTTTCACTCAATGCAACGTTTGATGAAGTTGATGCTGCAAGCTATGATGGGTTGTGGGTGCCAGGTGGGAGGGCTCCAGAGTATCTTGCTCATGTTCCTGGTGTTGTGGAACTGGTGACCAAGTTTGTCAGTTTGGGAAAACAAATTGCTAGCATTTGTCATGGACAGTTGATTCTGGCTGCTGCTGGAGTGGTTAAAGGCCGCACGTGCACGGCTTTTCCTCCTGTTAAACCCGTGCTAGTTGCTGCTGGTGCTCATTGGGTTGAACCTGACACTGAGGCAGCAACAGTGGTAGATGGTGATCTCATTACTGCAGCTACTTATGAGGGGCACCCGGAGCTCATTCGCCATTTCGTGAAGGCATTAGGAGGAAAAATAAGTGGTTTTGATAAGAAAATCCTCTTTATTTGTGGGGATTACATGGAAGATTATGAGGTCAAGGTTCCTTTTCAGTCCCTTCAGGCTTTAGGATGCCATGTTGATGCTGTTTGCCCCTCAAAGAAGGCCGGTGACACTTGCCCAACCGCTGTTCACGATTTTGAAGGGGATCAAACTTACAGTGAGAAACCAGGACATACTTTTGCTTTAACAGCTACCTTTGATGATGTGGATCCCTCAGGTTATGACGCTCTTGTCATCCCTGGAGGTCGAGCACCTGAGTATTTGGCATTGAACGAGTCAGTCATTGCCTTGGTGAAGTATTTCTTTGAAAACAAGAAGCCAGTGGCATCTATCTGTCATGGCCAACAGATTTTATCTGCTGCTGGTGTTCTCAAGGGAAGGAAATGTACTGCTTATCCGGCTGTGAAGCTTAATGTGGTTCTGTCAGGAGCAACATGGCTTGAGCCTGACCCTATAAGCCGATGCTTCACTGATGGAAATCTAGTTACTGGAGCTGCATGGCCAGGGCACCCTGAGTTCATTGCTCAGTTGATAGCACTACTTGGTATTCAAGTATCTTTCTAG >Glyma18g05220.2 sequence type=CDS gene model=Glyma18g05220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCCGAAGAAGGTTCTTCTCCTTTGCGGGGACTTCATGGAAGACTATGAAGCCATGGTTCCATTTCAGGCATTGCAAGCCTTCGGTCTCGCCGTCGACGCCGTCTGTCCCGGAAAGAAATCCGGCGATGTCTGCCGCACCGCTGTCCATGTACTTGCCGGCGCCCAGACTTATAGTGAGACGGTTGGTCACAATTTTTCACTCAATGCAACGTTTGATGAAGTTGATGCTGCAAGCTATGATGGGTTGTGGGTGCCAGGTGGGAGGGCTCCAGAGTATCTTGCTCATGTTCCTGGTGTTGTGGAACTGGTGACCAAGTTTGTCAGTTTGGGAAAACAAATTGCTAGCATTTGTCATGGACAGTTGATTCTGGCTGCTGCTGGAGTGGTTAAAGGCCGCACGTGCACGGCTTTTCCTCCTGTTAAACCCGTGCTAGTTGCTGCTGGTGCTCATTGGGTTGAACCTGACACTGAGGCAGCAACAGTGGTAGATGGTGATCTCATTACTGCAGCTACTTATGAGGGGCACCCGGAGCTCATTCGCCATTTCGTGAAGGCATTAGGAGGAAAAATAAGTGGTTTTGATAAGAAAATCCTCTTTATTTGTGGGGATTACATGGAAGATTATGAGGTCAAGGTTCCTTTTCAGTCCCTTCAGGCTTTAGGATGCCATGTTGATGCTGTTTGCCCCTCAAAGAAGGCCGGTGACACTTGCCCAACCGCTGTTCACGATTTTGAAGGGGATCAAACTTACAGTGAGAAACCAGGACATACTTTTGCTTTAACAGCTACCTTTGATGATGTGGATCCCTCAGGTTATGACGCTCTTGTCATCCCTGGAGGTCGAGCACCTGAGTATTTGGCATTGAACGAGTCAGTCATTGCCTTGGTGAAGTATTTCTTTGAAAACAAGAAGCCAGTGGCATCTATCTGTCATGGCCAACAGATTTTATCTGCTGCTGGTGTTCTCAAGGTATTATTACTGTAA
>Glyma18g05220.1 sequence type=predicted peptide gene model=Glyma18g05220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPKKVLLLCGDFMEDYEAMVPFQALQAFGLAVDAVCPGKKSGDVCRTAVHVLAGAQTYSETVGHNFSLNATFDEVDAASYDGLWVPGGRAPEYLAHVPGVVELVTKFVSLGKQIASICHGQLILAAAGVVKGRTCTAFPPVKPVLVAAGAHWVEPDTEAATVVDGDLITAATYEGHPELIRHFVKALGGKISGFDKKILFICGDYMEDYEVKVPFQSLQALGCHVDAVCPSKKAGDTCPTAVHDFEGDQTYSEKPGHTFALTATFDDVDPSGYDALVIPGGRAPEYLALNESVIALVKYFFENKKPVASICHGQQILSAAGVLKGRKCTAYPAVKLNVVLSGATWLEPDPISRCFTDGNLVTGAAWPGHPEFIAQLIALLGIQVSF* >Glyma18g05220.2 sequence type=predicted peptide gene model=Glyma18g05220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPKKVLLLCGDFMEDYEAMVPFQALQAFGLAVDAVCPGKKSGDVCRTAVHVLAGAQTYSETVGHNFSLNATFDEVDAASYDGLWVPGGRAPEYLAHVPGVVELVTKFVSLGKQIASICHGQLILAAAGVVKGRTCTAFPPVKPVLVAAGAHWVEPDTEAATVVDGDLITAATYEGHPELIRHFVKALGGKISGFDKKILFICGDYMEDYEVKVPFQSLQALGCHVDAVCPSKKAGDTCPTAVHDFEGDQTYSEKPGHTFALTATFDDVDPSGYDALVIPGGRAPEYLALNESVIALVKYFFENKKPVASICHGQQILSAAGVLKVLLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
