SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G10710 | AT | Annotation by Michelle Graham. TAIR10: global transcription factor C | chr4:6602226-6605450 REVERSE LENGTH=1074 | SoyBase | E_val: 0 | ISS |
| GO:0007346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0008284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0009987 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular process | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005719 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear euchromatin | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0035101 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: FACT complex | SoyBase | N/A | ISS |
| KOG1189 | KOG | Global transcriptional regulator, cell division control protein | JGI | ISS | |
| PTHR13980 | Panther | CDC68 RELATED | JGI | ISS | |
| PTHR13980:SF12 | Panther | TRANSCRIPTION REGULATION | JGI | ISS | |
| PF00557 | PFAM | Metallopeptidase family M24 | JGI | ISS | |
| PF08512 | PFAM | Histone chaperone Rttp106-like | JGI | ISS | |
| PF08644 | PFAM | FACT complex subunit (SPT16/CDC68) | JGI | ISS | |
| UniRef100_G7J7Y6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: FACT complex subunit SPT16 n=1 Tax=Medicago truncatula RepID=G7J7Y6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233EE66 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EE66 related cluster n=1 Tax=unknown RepID=UPI000233EE66 | SoyBase | E_val: 0 | ISS |
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Glyma18g05090 not represented in the dataset |
Glyma18g05090 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g33140 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g044600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g05090.2 sequence type=CDS gene model=Glyma18g05090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGACCATCGAAATGGAAGTACACAACCTCCTAATGGAAAGACCAGTGCAGCAGGATCCGCATATTCTATTGATCTGAATGCATTTCAATCCCGATTGAAAGCTTTTTATGAGCACTGGGATGATCACAAAACAGATTTGTGGGGCTCTTCTGATGCAATAGCAATAGCATGTCCTCCACCTTCAGAAGATCTGCGATACCTGAAATCTACTGCTCTGAACTTATGGCTGCTTGGATTTGAGTTCCCTGAGACAATTATGGTTTTCATGAAGAAGCAGATCCATATCTTGTGCAGCCAAAAGAAGGCTTCTATTCTTGAATCTGTCAAAAAATCTGCCAGAGAGGCAGTTGGTGCAGATCTTGTTTTGCATGTCAAACCTAAAAACGATGATGGATCTGCTCTAATGGATGCTATATTCCGCGCCATCCGTGCTCTGCCAAAGTCTGATGACCATGATTCTTCCACTGTTGGATACATATCAAGAGAGGCTCCTGAAGGGAAACTGCTTGAAACATGGACTGAAAAATTAAAAAATACAAAATTTCAACTAATTGATGTTGCCAATGGGTTCTCTTATTTGTTTGCGGCAAAGAGTAATGAGGAGCTTACATCAATTAAGAGAGCAGCATACCTCACCACCAGTGTGATGAAAAACTTTGTGGTTACAAAACTTGAGAATGTAATAGATGAGGAGAAGAAAATCTCTCATTCAACGTTGATGGAGGAGACTGAGAAAGTTATTCTGGAACCTTCAAAAGTCAATTGTAAGCTAAAGGCAGATAACGTTGATATTTGTTACCCCCCAATTTTTCAGAGTGGTGGAGAGTTTGATCTGAAGCCCAGTGCTGTCAGCAATGATGAGTTATTGCATTATGATTCTGCCAGCGTGATTATATGTGCAGTTGGAGCTCGATATAAGAGTTATTGCTCAAACATAGCTAGGACCTTCTTGATTGATGCAGACCCTCTTCAAAGTAGGGCTTATGAGGTTCTTCTGAAAGCCCATGAAGCTGTCATAGGTTCTATGAAGCCTGGAAACAAGTTAAGTGTTGCATACCAAGCTGCAGTTTCTGTTGTGGAAAGGGATGCACCTGACTTGATTTCATATTTGACAAAATCTGCTGGGACAGGCATCGGCATTGAGTTTCGTGAATCAGGATTGAATCTTAATGCAAAAAATGAACAGATAATTAGAGAAGGCATGGTCTTTAACGTGTCACTTGGTTTTCAGAATTTACAGTGTGAGAACAGTAAGTCTAAGAACAAGCAATTCTCTTTGTTGCTTGCTGACACAGTCATCATCACCAAAGATAAGACAGAAATTGTGACTTCTACAAGCTCAAAAGCTCTGAAGGATGTAGCATACTCTTTCAATGAGGATGAGGAAGAGGAAAGGCCAAGCACAAAATCAGATGCCAAGAAAGCGGAGCCCTTTATGTGTAAGACAACTCTTAGGTCAGACAATCATGAAGTTTCAAAGGAGGAGCTTCGCAGGCAGCATCAGGCAGAACTTGCTCGCCAGAAAAATGAAGAAACTGCAAGGCGTCTTGCTGGTGGTGGAAGTGAAACAGGAGAAGCCCGTTCCTCTGCAAGGACTTCAGCAGAACTCATGGCCTACAAAAACATAAATGACCTTCCCCCTCCCAGAGAGATGATGATTCAGATTGATCAGAAGAATGAAGCAGTTCTCTTGCCTATAAATGGAAGCATGGTACCTTTTCATGTGGCTTTCATTCGAACTGTTTCCAGCCAGCAGGACACCAACCGCAATTGCTATGTCAGAATTATTTTTAATGTTCCTGGGACTCCTTTCAGTCCTCATGATGCAAACTCAATGAAGTTCCCTGGATCTATATATTTGAAGGAGGCGTCATTCCGCTCCAAGGATTCGAGGCACATAAGTGAGGTTGTGCAGTCCATTAAAACACTCAGGCGTCAAGTTGTAGCAAGGGAGTCTGAGAGAGCTGAGAGGGCAACCTTGGTTACTCAGGAGAAACTGCAACTTGCTAATAATAGGTTTAAGCCGATAAGGTTATCTGACCTTTGGATCCGTCCTGCTTTTGGTGGGCGTGGGAGGAAGATACCTGGTACACTTGAGGCTCATGTTAATGGATTTCGTTATTCTACCACTAGGCAAGATGAGCGTGTAGACATAATGTTTGGCAACATTAAGCATGCATTTTTCCAGCCAGCAGAGAATGAAATGATCACTCTCCTACACTTCCATCTGCACAACCATATTATGGTAGGAAATAAAAAGACCAAGGATGTTCAATTTTATGTTGAGGTTATGGACATGGTCCAGAATGTCGGGGGTGGTAAGAGGTCAGCCTATGATCCTGACGAGCTTGAAGAAGAACAACGAGAGCGACAGAGGAAGAACAAAATTAATGTAGAATTCCAAACCTTTGTGAATCGGGTGAATGATCTCTGGGGGCAACCTCAATTCAATGGCTTTGACCTGGAGTTTGACCAACCTCTTAGAGAGCTTGGCTTCCCTGGGGTGCCTCATAAATCTTCAGTATTTATTGTACCTACTTCTGCCTGCCTTGTTGAACTGATAGAGACCCCTTTCCTTGTTGTCACGCTTAGTGAGATTGAGATTGTTAATCTTGAGAGAGTTGGACTTGGGCAGAAAAACTTTGATATGACAGTAGTTTTTAAGGACTTCAAGAGGGATGTCCTCAGGATTGATTCTATCCCTTCTACATCACTGGATGGCATCAAGGAGTGGCTTGACACAACAGACATCAAATATTATGAGAGCAGGCTGAATCTGAACTGGCGTCAGATCCTGAAGACAATCACGGATGACCCTCAGAGCTTTATTGAAGGTGGTGGTTGGGAGTTTCTGAATTTGGAAGCTACTGATTCAGAATCTGAGAACTCAGAGGAGTCAGATAAAGGTTACGAACCATCTGATGTGGAACCTGAATCTGATTCGGAGGATGAAGCTTCTGATAGTGAATCACTTGTTGAGTCTGAGGATGATGATGACGATGAGGATTCCGAGGAGGATTCAGAAGAAGAGAAGGGAAAGACATGGGAGGAACTGGAGAGGGAAGCAAGCAATGCAGATAGGGAGAAGGGAAACGAGTCTGACAGCGAAGAAGATAGGAAAAGAAGAAAGGCAAAAGGCTTTGGTAAGTCACGAGGAGCTAGTCTAAGCAGTAGTATGCCAAAGCGGTCTAAGTTAAGATAG
>Glyma18g05090.2 sequence type=predicted peptide gene model=Glyma18g05090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MADHRNGSTQPPNGKTSAAGSAYSIDLNAFQSRLKAFYEHWDDHKTDLWGSSDAIAIACPPPSEDLRYLKSTALNLWLLGFEFPETIMVFMKKQIHILCSQKKASILESVKKSAREAVGADLVLHVKPKNDDGSALMDAIFRAIRALPKSDDHDSSTVGYISREAPEGKLLETWTEKLKNTKFQLIDVANGFSYLFAAKSNEELTSIKRAAYLTTSVMKNFVVTKLENVIDEEKKISHSTLMEETEKVILEPSKVNCKLKADNVDICYPPIFQSGGEFDLKPSAVSNDELLHYDSASVIICAVGARYKSYCSNIARTFLIDADPLQSRAYEVLLKAHEAVIGSMKPGNKLSVAYQAAVSVVERDAPDLISYLTKSAGTGIGIEFRESGLNLNAKNEQIIREGMVFNVSLGFQNLQCENSKSKNKQFSLLLADTVIITKDKTEIVTSTSSKALKDVAYSFNEDEEEERPSTKSDAKKAEPFMCKTTLRSDNHEVSKEELRRQHQAELARQKNEETARRLAGGGSETGEARSSARTSAELMAYKNINDLPPPREMMIQIDQKNEAVLLPINGSMVPFHVAFIRTVSSQQDTNRNCYVRIIFNVPGTPFSPHDANSMKFPGSIYLKEASFRSKDSRHISEVVQSIKTLRRQVVARESERAERATLVTQEKLQLANNRFKPIRLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDIMFGNIKHAFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNVGGGKRSAYDPDELEEEQRERQRKNKINVEFQTFVNRVNDLWGQPQFNGFDLEFDQPLRELGFPGVPHKSSVFIVPTSACLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTVVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQSFIEGGGWEFLNLEATDSESENSEESDKGYEPSDVEPESDSEDEASDSESLVESEDDDDDEDSEEDSEEEKGKTWEELEREASNADREKGNESDSEEDRKRRKAKGFGKSRGASLSSSMPKRSKLR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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