Glyma18g05030 - SoyBase

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Report for Sequence Feature Glyma18g05030

Feature Type:	gene_model
Chromosome:	Gm18
Start:	3755275
stop:	3767089
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g05030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G65920	AT	Annotation by Michelle Graham. TAIR10: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain \| chr1:24525267-24529204 REVERSE LENGTH=1006	SoyBase	E_val: 0	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005543	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipid binding	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG1427	KOG	Uncharacterized conserved protein, contains RCC1 domain	JGI		ISS
PTHR22870	Panther	REGULATOR OF CHROMOSOME CONDENSATION	JGI		ISS
PTHR22870:SF25	Panther	REGULATOR OF CHROMOSOME CONDENSATION-RELATED	JGI		ISS
PF00415	PFAM	Regulator of chromosome condensation (RCC1) repeat	JGI		ISS
PF01363	PFAM	FYVE zinc finger	JGI		ISS
PF08381	PFAM	Disease resistance/zinc finger/chromosome condensation-like region	JGI		ISS
UniRef100_G7J7Z5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RCC1 and BTB domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J7Z5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EFC7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EFC7 related cluster n=1 Tax=unknown RepID=UPI000233EFC7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g05030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g05030

Paralog	Evidence	Comments
Glyma11g33200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g05030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g044000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g05030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g05030

Limit To All Plant Sequences

>Glyma18g05030.2   sequence type=CDS   gene model=Glyma18g05030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAATGGAAGAAGAGTCCTTGGCAGCAGTCCCATTTGACAGAGCTATTGAACAGGCAATTGTATCTATCAAGAAGGGTGCATATTTACTTAAGTGTCGTCGTAGAGGAAAGCCGAAGCTCTGTCCTTTCAGACTTTCTCAGGATGAGAGAAATTTGATTTGGTACTCAGGACAGCAGGAAAAGCACTTGCGATTGAGTGTAGTTACCAAAATCGTTCAAGGGCAGGAACATATAAGGTCCCAGAAGCAAAATGAGTCCGAAAAGGAGTGTCATTCATTTTCACTAATCTATGCTAATGGTGAACGTTCTCTTGATCTGATATGCAAGGACAAAGCCCAAGCTGCTTCTTGGTTTGTTGGATTGAAAGCTGTGATTTCTAGGTGTCAGCATCCTAGAGCTTTTAGTAGTTTAAGAAGTTGCAAAGGGGTGCAGAGTTGTGCTAGTAGTCCAGCTGGAATCTTAAGAAGAAAGAAAAATCTTGGCCTTCTGGACGATACCTCTCAGTTTACTCAGGTACATAGCGTATGTGCAAGTCCCACTTTGTCACTTTCTGAAAGGTGCTTTTCTGATGGCTTGTCATGTACCTCTGATAACTTTTATTCATCGTCATCTTTCCTTTCCAACACTCATGGCGTAACAGATAATTCAGTGCCAAGTTCTCCATACATTGATCCTGATAATCATAGCAACATTGAGTCAACCCGCATTGATAAGGAGCACAAGAAGAATTTGTCCTATAGGTATCTGATGCATTCCACTTCCCCACATGTAGGAAAAAATAATGTGTTGAAAGATGTAATGATATGGGGTGGAGGGATTGGATGTCTTGTAGGGATTGTGAATGAAAGGTTTGTTCAGCCTAGAATTTATTCTTTAGTGCCAAAGTTACTAGAATCCACTGCAATGTTAGATGTTCATAACATAGCTTTAGGAGGAAAACATGCTGCCTTAGCTACAAAACAAGGGGAAGTGTTTTGCTGGGGTCACGGTAAGTGGGGAAGACTGGGGCAAAAAATTGATATGGACATTAGCTCCCCCAAAATAGTTGATTCTCTTAATGGTCTTCATGTAAAAAATGTTGCTTGTGGTGAGTATCATACCTGTGCTTTGACAGATTCTGGCGAAGTATATACTTGGGGGAATGATGTTTGTTGTGCAGATTTATTGATTGAAGGGAGAACTAGAAGTCAGTGGATACCACAAAAACTTGGTGGATCCTTAGATGGTATTAGTATCTCAAGTGTTGCCTGTGGGGAATGGCATACTGCAATTGTCTCTAGTTGTGGGAGGTTATTTACTTATGGAGATGGTACATTTGGGGTTCTTGGCCATGGCGATCTTCGGAGCTATTCAAGTCCAAAAGAAGTTGAATCTCTTAGTGGTCTACGGGTGAGGTCTGCTGCTTGTGGATCATGGCATACGGCTGCTATTGTTGAAGTCATGTTTGACCGTTTCAGGTACAATAGTGCTAGTGGTAAGTTGTTTACATGGGGTGATGGAGATGAAGGGAGGCTTGGTCATGTTGATAATGGAAGCAAGCTTGTACCAACACGTGTTACACAACTTGTTGACTATGATTTTGTTCAAGTGTCATGTGGAAGAATGTTGACTGTAGCACTCACTAACATGGGCAAGGTTTTTGCAATGGGAAGTGCCAAATATGGACAACTAGGAAATCCACATGCCAGGGATAAAGCAGTCATGGTTGAAGGACAACTCAAACAAGAGTTTGTTAAGGTGATATCAACCGGTTCATACCATGTTGCTGTTTTGACTTCTGGGGGGAGTGTCTACACATGGGGCAGAGGTGAAAATGGCCAACTGGGGCTAGGTGATACTGAAGACAGATACACACCTTGTTTTGTTGAGGCTCTAAGAGACAGACAGGTAAATACTATCACTTGTGGTCCAAGCTTCACAGCTGCAATCAGTTTACACAAACCTATTTCTATTAGTGACCAGTCAACTTGTACTGGTTGTAGGTTGCCATTTGGGTTCACAAGGAAGAAGCACAACTGCTATAGCTGTGGTCTTTTGTTCTGTCGTGCTTGTAGTAGTAAAAAGATTACAAATGCTCCTCTAGCCCCTAGTAAGAGCAAGGCTTTTCGAGTTTGTGATCAGTGTTTCGATAAACGGCAAGGGGGTACACATCCTGTAATGGCATCAAAGTCCAGAAATCACAACTCTCAGCAATTGTTGAAGCATCAACACAAAATTGCTGATGTGACTGAAGATAGGGGAGAGACAACTGTGACACAAGGTCCTTTGTTATCACTTGGTCAATCATGCTACAGGAAAAGCATGCCAAGTGGACGTAAGGATTGGAAAAGCAATCAAGAAAGTCAGCAGGATGTAGAAGATAGTTCTCCTATGCTAGGTGGAATGCCACAGTGGGGGCAAGTTCCTTGCCCTGCCATATTTAAAATAAATTCTACAGAAAATCCAGTTGCTCATGTTTCTTCATCCAAAAATAAATTAGCCACAGTTTCTCCCTTTAATGTGGAATCTACAACATATAACTTCTCCAATGTAGAGACAGATGCAACAAAGTCTGACAAGGTGCTCCTTGAAGAAGTTCATAGGCTGAGAGCCGAGGCTAAGAGACTTGAAGAGCAGTGTGAGCTCAAAAACCATAAAATACAAGAGTGTCAACAAAAAATTGAGGAGAGTTGGTTTGTAGCAAGAGAGGAAGCTGCTAAGTGCAAGGCAGCAAAAGAGGTCATAAAAGCTTTAGCACTAAGGCTTCATACAATATCAGGAAAAGATAACGTTGGACAAGAAGGAAAAGCTGGGCCGAATGAATTTGTGCCCAATGTGGCACCCATACATACAGAAATGAAGAGTCCACGTGATGTTAATGTGGATAGTCTATCCAATTCCCCTATAGTATTCTCTGACACATTAAAATCCAAATTTGGGAGAAGTTTGTTCCCCAAAATTGATAATTCTAATAGAGCAGAATCTCAACAGGACAATATTGATGGCTTGAAGGCTGAATGGGTAGAACAATATGAGCCCGGTGTTTACATCACATTTACAACTTTGCAATGTGGGAAAAAAGGCCTTAAGCGAGTGAGATTTAGTCGAAAGCGATTCTCAGAAAAGGAAGCTGAAAAATGGTGGGAAGAGAATCAAGGCACGGTGTATCACAAGTATGGGATTGAAGGATATATAAATAATAACACTAGCCAAAGTCAGGTGAAAGGCTAA

Predicted protein sequences of Glyma18g05030

Limit To All Plant Sequences

>Glyma18g05030.2   sequence type=predicted peptide   gene model=Glyma18g05030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTMEEESLAAVPFDRAIEQAIVSIKKGAYLLKCRRRGKPKLCPFRLSQDERNLIWYSGQQEKHLRLSVVTKIVQGQEHIRSQKQNESEKECHSFSLIYANGERSLDLICKDKAQAASWFVGLKAVISRCQHPRAFSSLRSCKGVQSCASSPAGILRRKKNLGLLDDTSQFTQVHSVCASPTLSLSERCFSDGLSCTSDNFYSSSSFLSNTHGVTDNSVPSSPYIDPDNHSNIESTRIDKEHKKNLSYRYLMHSTSPHVGKNNVLKDVMIWGGGIGCLVGIVNERFVQPRIYSLVPKLLESTAMLDVHNIALGGKHAALATKQGEVFCWGHGKWGRLGQKIDMDISSPKIVDSLNGLHVKNVACGEYHTCALTDSGEVYTWGNDVCCADLLIEGRTRSQWIPQKLGGSLDGISISSVACGEWHTAIVSSCGRLFTYGDGTFGVLGHGDLRSYSSPKEVESLSGLRVRSAACGSWHTAAIVEVMFDRFRYNSASGKLFTWGDGDEGRLGHVDNGSKLVPTRVTQLVDYDFVQVSCGRMLTVALTNMGKVFAMGSAKYGQLGNPHARDKAVMVEGQLKQEFVKVISTGSYHVAVLTSGGSVYTWGRGENGQLGLGDTEDRYTPCFVEALRDRQVNTITCGPSFTAAISLHKPISISDQSTCTGCRLPFGFTRKKHNCYSCGLLFCRACSSKKITNAPLAPSKSKAFRVCDQCFDKRQGGTHPVMASKSRNHNSQQLLKHQHKIADVTEDRGETTVTQGPLLSLGQSCYRKSMPSGRKDWKSNQESQQDVEDSSPMLGGMPQWGQVPCPAIFKINSTENPVAHVSSSKNKLATVSPFNVESTTYNFSNVETDATKSDKVLLEEVHRLRAEAKRLEEQCELKNHKIQECQQKIEESWFVAREEAAKCKAAKEVIKALALRLHTISGKDNVGQEGKAGPNEFVPNVAPIHTEMKSPRDVNVDSLSNSPIVFSDTLKSKFGRSLFPKIDNSNRAESQQDNIDGLKAEWVEQYEPGVYITFTTLQCGKKGLKRVRFSRKRFSEKEAEKWWEENQGTVYHKYGIEGYINNNTSQSQVKG*

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