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Report for Sequence Feature Glyma18g05020

Feature Type:gene_model
Chromosome:Gm18
Start:3745464
stop:3750059
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g05020
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G65910AT Annotation by Michelle Graham. TAIR10: NAC domain containing protein 28 | chr1:24520933-24524108 REVERSE LENGTH=631 SoyBaseE_val: 2.00E-161ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007275GO-bp Annotation by Michelle Graham. GO Biological Process: multicellular organismal development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF02365PFAM No apical meristem (NAM) protein JGI ISS
UniRef100_G7J7Z7UniRef Annotation by Michelle Graham. Most informative UniRef hit: NAC domain protein n=1 Tax=Medicago truncatula RepID=G7J7Z7_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233E70BUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E70B related cluster n=1 Tax=unknown RepID=UPI000233E70B SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g05020
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g05020
ParalogEvidenceComments
Glyma11g33210 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g05020 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g043900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g05020
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g05020
>Glyma18g05020.1   sequence type=CDS   gene model=Glyma18g05020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATATGGCTCCTGTTTCATTGCCTCCTGGGTTTAGGTTCCACCCCACCGACGAGGAACTCGTTTCTTATTACCTCAAAAGAAAGATAAATGGTCGTAAGATTGAGTTAGAGATCATCCATGAAGTTGATCTTTATAAGTGTGAACCATGGGACTTGCCAGGGAAGTCATTGTTACCGGGTAAAGATTTGGAGTGGTATTTCTTCAGCCCTAGAGATAGGAAGTACCCAAATGGATCAAGGACCAATCGTGCAACCAAATCTGGGTATTGGAAGGCCACAGGGAAGGACCGTAAGGTGAACTCTGAGAGCCGTGCAATAGGGATGAAGAAAACCCTAGTTTACTATAGAGGTAGGGCACCACATGGATGTCGCACAGGTTGGGTTATGCATGAGTATCGTCTTGATGAGACTCAGTGCGAAACTAATTCAGGCTTGCAGGATGCATATGCTCTTTGCCGTGTGTGCAAGAAGACTGCAGTGATTCCCCCAAAGGTTGGAGATCAGCACTATGTTAATGTTCCTAGCCATGTAAATCAGATTACAAGTGATCAATCATCAAGCATTGACATTGAGATATACTCAGAAGGAAGAGGTGAAGTTTTAGAGAGCTCAAATTATTTGATGCCGTGGGATACATGCCCATCCCCAAACATAAATATTGGGTCTGCTCTCAATATCAATATCAATGGTGGGACAAGGGATAATAACATTGGGACATGGTCACACTTCTTAGCAGAAGACTTACCCAATCTTCCAACATCTGCTTCTTCATTTCCCAATTATGGATCTATGAGTTACCCTCCATCAAAGGTGGATATAGCACTAGAGTGTGCAAGGATGCAACATAGGTTTACCATGCCTCCTTTGGAGGTGCAGGACTTCCCTCAAGTTGGCATTTCCGAGCTGAAGATGGCACAAGCCTCGGGTTCCAATATGTGTGGAGGAAGCAGAAATAATGAAACAGATATCTTGCAGGAAATTCTTTCAGTTGCTCATGCTTCCCATGAGTTAATAAATCAGTCCAACTACTCATCACATTCACAGGCATTGGGTGCCAATGAAAATAACTATGCTGCACCTCATGAAAGTGATTTTACTTTTATGGTTGGCAACAATTACAATCGTGTGAATGATATGAACACCATGGGATTTGTTGACAAAGCATGGGAAGACCCTAACGCAAGATCAATAGAGATCGGGGATCTTGATGATGGATTCAAGACAGAGAGGATGGTGGAGAACTTAAGATGGGTTGGAATGTCCAGCAAAAATATGGAAAAGGGCTTTATGGAGGAGCAAAAGATTGTGCCGATTGAGCATATCTCAAACTTCCAAACTAACAGGGAAGAAAACGAGGTGCAAGTAGGATCTCAGCAACACAATAACAACAAAGAACTCAATGACACTGACATTGACGATTTCTCAATGGGGTTCATCAATGGTGACGACCACAATGAGAACTTCATAGATGAGGGTAACATTAATTATTCAAATTCTACAAACTTTGAGGTTGTTGAGGAAACAAAAGTCAGTCATGGAATGTTTGTCTCCACTCGCCAAGTAGCTGACACATTCTTTCATCAAATAGCTCCTTCACAAACCGTGAAAGTTCAACTCAATCCATTAATGGCTGAAGATCAATCTATAGAGAATGCAGTAATGGTTAACCAAGGGCCCCCTTTCTTTAGAAAGTTCAAGGCCTATGTGATGGGGAAGCTGACAAAGTCATCAAACACAATAGCAAGTGCCCTTGTGTTCCTCTTTGCACTTTTGTTGATGCATTGTGTGTTTTTGAAGGAACAAGTGGAAGATTTGAAATCGGACCCCAAATGCTTTGATGGTGCTAACTCCATGAAGAAAATTATGAGACAACCAGCTGAGAACATCATATGGAATGAACAAGAAAATTTTTGGTCTGTTGGTATTAAATGCGGGAAAGGATTTAGTGTGGTCTTGAAGAAGATAGGCATTTTCCTCACCATATCATTGGCTCTTTGTACCATGTGGGCTAACCATGTTATAGTTGACTCTTAG
Predicted protein sequences of Glyma18g05020
>Glyma18g05020.1   sequence type=predicted peptide   gene model=Glyma18g05020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMAPVSLPPGFRFHPTDEELVSYYLKRKINGRKIELEIIHEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSESRAIGMKKTLVYYRGRAPHGCRTGWVMHEYRLDETQCETNSGLQDAYALCRVCKKTAVIPPKVGDQHYVNVPSHVNQITSDQSSSIDIEIYSEGRGEVLESSNYLMPWDTCPSPNINIGSALNININGGTRDNNIGTWSHFLAEDLPNLPTSASSFPNYGSMSYPPSKVDIALECARMQHRFTMPPLEVQDFPQVGISELKMAQASGSNMCGGSRNNETDILQEILSVAHASHELINQSNYSSHSQALGANENNYAAPHESDFTFMVGNNYNRVNDMNTMGFVDKAWEDPNARSIEIGDLDDGFKTERMVENLRWVGMSSKNMEKGFMEEQKIVPIEHISNFQTNREENEVQVGSQQHNNNKELNDTDIDDFSMGFINGDDHNENFIDEGNINYSNSTNFEVVEETKVSHGMFVSTRQVADTFFHQIAPSQTVKVQLNPLMAEDQSIENAVMVNQGPPFFRKFKAYVMGKLTKSSNTIASALVFLFALLLMHCVFLKEQVEDLKSDPKCFDGANSMKKIMRQPAENIIWNEQENFWSVGIKCGKGFSVVLKKIGIFLTISLALCTMWANHVIVDS*






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