Glyma18g04770 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g04770

Feature Type:	gene_model
Chromosome:	Gm18
Start:	3529879
stop:	3531558
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g04770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G37490	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr5:14887744-14889051 FORWARD LENGTH=435	SoyBase	E_val: 2.00E-122	ISS
GO:0002679	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response	SoyBase	N/A	ISS
GO:0009693	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
PTHR22849	Panther	WDSAM1 PROTEIN	JGI		ISS
PF04564	PFAM	U-box domain	JGI		ISS
UniRef100_I1MZG3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MZG3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8S8Z6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Syringolide-induced protein 13-1-1 n=1 Tax=Glycine max RepID=Q8S8Z6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g04770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g04770

Paralog	Evidence	Comments
Glyma11g33450	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g04770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g042100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g04770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g04770

Limit To All Plant Sequences

>Glyma18g04770.1   sequence type=CDS   gene model=Glyma18g04770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTTGTCTTGGTCAAGAAGGAACGTTTTCCGCCGTGCCAAGAAGGAGAAGTCACAAACTCAATTGGAAGTGGAGGTTGTGATTCCCAACCACTTTCACTGCCCGGTGAGTCTGGAGCTGATGACAGACCCAGTGACTTTATCAACCGGCATCACCTACGACCGTGTGAGCATTGAGAAGTGGATCGAGGGAGGGAACAGAACCTGCCCCGTCACCAACCAGGTGCTGACAACCTTCGACATCATCCCCAACCACGCCATTCGCAGGATGATTCAGGATTGGTGTGTCGAAAATAGTTCTTATGGGATTGATAGAATCCCCACACCTCGTATTCCTATCTCGGCATACGAGGTTTCCGACACGTGTACCAGGATCTTGTCGGCTTGCCAGCGTGGAGATGACAAGAGGTGTCAGGAGTTGGTCGGGAAGATTAAGGTTTGGAGTAGAGAGAGTGAGAGGAACAAGAGGTGCATAGTTGGTGCTGGTGCTGGTGCTGTTCTTGCATATGCCTTTGATTGTTTCTCAAGTAACTCTATTGAAAAACATGTGGTGCTTTTGGAGGAGGTTTTGGAGGTGATGACATGGATGGTCCCACTTGGGGAAGAGGGTGTTTCTAAATTGAGTTCAGGAGCTTCTTTGAATTCGTTGGTATGGTTTCTAGAGGGGAAAGACCTTGCATCAAGGCAAAGTGCTGCTTTGTTGCTTAAAGAAGTGTGTGTTCAAGAATTGGCCAAGGTTGGAGAAGTTGTTGAAGCTTTGGTTAAGATGGTTAGGGAGCCTATTGGGAGCACTTCCACCAAGGCTTGTTTGGCAACAATTTTTAACTTGGTGTCGTTGGCTGCGAATAGAGAGGGAATTGCTCAAAGATTTGTGGAGTTGGGTTTGGTTTCACTTTTGCTAGAGGCTATTGTTGATGGAGAGAAAGGGGTGTGTGAGAAGGCACTTGGGGTGTTGGATTGCATTTGTGATTGCGAGAAGGGGAAGGAGGTTGTGAAGAGCAATGCTCTAGCCTTGCCTCTTGTTGTTAGGAAGCTTTTGAGGGTGTCACCATTGGCTTCAGGTTTTGCTGTGTCTATTCTTAGGAAGATTTGTGACAAGAGGGAGGAAGGGATTCTGATTGAGGCACTTCAAGTTGGGCTTTTTCAGAAGCTCTTGGTTCTGCTGCAGGTTGGGTGTGATGAGAGCACCAAGGAGAATGCTACCGGGTTGTTGAAACTGTTGAATGGTTACAGGAACAAAGCGGAGTGCACTGACTCATCATTGAATTTCGAGCATCTTAAGAAGCCATTTTAA

Predicted protein sequences of Glyma18g04770

Limit To All Plant Sequences

>Glyma18g04770.1   sequence type=predicted peptide   gene model=Glyma18g04770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLSWSRRNVFRRAKKEKSQTQLEVEVVIPNHFHCPVSLELMTDPVTLSTGITYDRVSIEKWIEGGNRTCPVTNQVLTTFDIIPNHAIRRMIQDWCVENSSYGIDRIPTPRIPISAYEVSDTCTRILSACQRGDDKRCQELVGKIKVWSRESERNKRCIVGAGAGAVLAYAFDCFSSNSIEKHVVLLEEVLEVMTWMVPLGEEGVSKLSSGASLNSLVWFLEGKDLASRQSAALLLKEVCVQELAKVGEVVEALVKMVREPIGSTSTKACLATIFNLVSLAANREGIAQRFVELGLVSLLLEAIVDGEKGVCEKALGVLDCICDCEKGKEVVKSNALALPLVVRKLLRVSPLASGFAVSILRKICDKREEGILIEALQVGLFQKLLVLLQVGCDESTKENATGLLKLLNGYRNKAECTDSSLNFEHLKKPF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain