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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G52640 | AT | Annotation by Michelle Graham. TAIR10: Zn-dependent exopeptidases superfamily protein | chr3:19515078-19520290 REVERSE LENGTH=676 | SoyBase | E_val: 0 | ISS |
| GO:0016485 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein processing | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| KOG2657 | KOG | Transmembrane glycoprotein nicastrin | JGI | ISS | |
| PTHR21092 | Panther | NICASTRIN | JGI | ISS | |
| PF05450 | PFAM | Nicastrin | JGI | ISS | |
| UniRef100_G7J8R1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nicastrin n=1 Tax=Medicago truncatula RepID=G7J8R1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233ECE1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233ECE1 related cluster n=1 Tax=unknown RepID=UPI000233ECE1 | SoyBase | E_val: 0 | ISS |
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Glyma18g04745 not represented in the dataset |
Glyma18g04745 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g33470 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g041900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g04745.2 sequence type=transcript gene model=Glyma18g04745 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATAAATATTGAATTTCCGATTGGAGTTTGATAAGCAGTGGACTCCACCCAAGCAAGCAAAGCAGTCCTAACTTGTAATTTGGAAGCTGAATCAAAGCCGTACGATGCATTTGATCTCTATGAAATCACAGAATCCTACCAAATTCAGAATCAGAGAGGAAGAAAGCTGAGAAGACGGAATAGAAGAAGAAGAAAATAAAACCACACACACACTCTGCACACCATTCTCAGTATCACTAGGGTTTTATATTATTCATCCATGGCGCTAACCGTTTTCTCTCTCTTCTTTTTCTTCCTCTCCTTCACCTTCCACCTTCCCTCCGGCTTCTCAGGGCAATCGAGCTCCATGGAATCAGTGCCTGATCTACGCTTCCATCGACGGTTATCCTTGCGTGCGCCTGATGAATCTCTCTGGAACCATCGGTTGTTCAAATCCTGGACGAGATAAGGTTGTGGCTCCGATTGTAAGATTCGAAAATGTTGACAGAATAGCTGAGCCTTCTGCTGTATTGGTGTCACTGGATGAGTTCCCAACTCTCTTTACTAGAATATCGGATGACTCTAGCTTTGCTAGTAAAGTTGGTGGTGTACTGGTTGAACCAAGCACTGATTTTCAGAAGAAGTTAAAGGGATTTTCTCCAGACCAAAAATTTCCACAAGCTCAATTCGCTCTTTATCATAATACCAGCTATGAATGGAATCCAATTGGTTCTGGTATTATGTGGAAATCCTACAATTTTCCTGTATTTTTACTCACAGAAAGTGGCTCAAAGACTCTTCAAGAGTTTGTAACAAAGAATGAGGACACAAAGAAATCTTATACTTCTAATGTGGCTGAGTTTGACCTGGTGATGCAGACAGTGAAATCTGGAACACATGATTCAGAGTCTTGTTTAAAAGAAGAAACTTGCCTTCCTTTAGGTGGATACAGTGTCTGGTCATCTCTTCCTCCGATCAACATTTCATCCTTACAACGGTCTAAGCCCATTTTATTGACAGTGGCATCTATGGATTCTGCTTCATTTTTTCGGGACAAAAGCCTTGGTGCAGACTCCCCTATTTCTGGTTTAATTGCATTACTAGCAGCTGTTGATGCACTTTCTCATTTGGATGGTCTTGGTGACCTTAGTAAACAGCTTGTTTTTGCAGTTTTCACTGGAGAGGCATGGGGTTACCTTGGAAGTAGGAGATTTTTGGTAGAACTTGACATGCACTCAGATGCTGTTCATGGCCTTAATCAGACATTAATTGAAACGGTCATTGAAATTGGTTCTGTTGGAAAGGGTCTCAGTCAAGGTGTTAAAAACTTTTTTGCTCATACAAAAGGGGATTCTTCTGCCACAAATCAGACAGTGGCTGCCTTGAAACGTGCACAGGAGTCACTGATATCTGAAAACATAAAGATAGCATCTGCAAGTGCCTCAAATCCTGGGATACCTCCATCCTCTTTAATGTCCTTTTTGGAAAAGAATCCTGCAATCTCTGGTGTTGTCCTAGAAGATTTTGACTCTGTCTTTGTCAACAAGTTCTACCATAGTCATCTTGATGATTTATCAAATGTAAATTCGTCAGCTGTAGTTGCTGCTGCTTCTCTCATTGCCCGAACCCTTTACATGCTCGCTAGTGAAACTGAAGATGTACAAAATTCAACTTTGGCTGCTATAAATGTTAATGTCTCACTTGTTGAACAACTTTTGGGTTGCTTGTTAGACTGTGATCCTGGTCTTTCTTGTGAATTGGTGAAGAAATATATTTCACCCATGTCAACATGTCCAAGCCATTATGTAGGTGTTATCTTGGACGAACCTTCATCTGCACCATATGCAGGATACATCAATGACGTTCCCAGGTTCATCTGGAATTTTCTGGCCGACAGAACTTCTATCCCAAGGGAGAATAATATCTCAGATTGTCAACATGGTTGCAATGGTAGAGATGAAGTTTGTGTCAAAGCAGAGACAGATGGCAAGGGAGTTTGTGTTCTCTCTACAACGAGATTAATGTATACTCGTTTTGCATCCTCCAAAGAGGTGGTGTCATCACTTGTCTCATCGTGTTCTACAATCTATACCATATTTAGACTTTACCTCACGAATTGGCGCCTTGTATGTTCCAGCATATTCAACACGGCTAAAATTTGAATCAGGAGTGTGGAATGTTTTGCCCCCTAATTCCTCTGACAAAATGGGGGTTGTGGACCCTGTCTGGACAGAGAGCAACTGGAATACAATAGGTATGCGGGTCTACACAGTACAAAATGCTGCTTATGATCGTCTTGTTCTGTTTGGGGGCATCACTCTGACCGTCTTTGCATACCTTGCAATAGCAACCGCAAGAGCTTTTTTCAACAAAGCAATGAAGAGGGATTGACATTTTACTTCCAGAATCTGACTAGTAAATTTTGTGAAACTAGTAAATTCTATAGGGGATTAGGGTCATTTGATAGGCAAAATAACAGTTTCTGAAGAATTTCCAAGGATGTGCAGTATTTGGGGCCGCATTCTTGTGCTCATTAATTCTATTTCAGAAATTTCTCTATAACACGATCATTTTTGTCACTTGTAGGTAAGTGTAAGGAAATATAATGAAATTAGTTAAAATTAGCTTGTGCTATAAATGCGTAGTTAGTGACTACACGATTTTTATTTGGTTAATTATTTTCACTACTTATTATCATTGTTTAAATTTATTCGGTGTCATTGAGAGTTATCATATGGGTTTAACTGTT
>Glyma18g04745.1 sequence type=CDS gene model=Glyma18g04745 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATCTCTCTGGAACCATCGGTTGTTCAAATCCTGGACGAGATAAGGTTGTGGCTCCGATTGTAAGATTCGAAAATGTTGACAGAATAGCTGAGCCTTCTGCTGTATTGGTGTCACTGGATGAGTTCCCAACTCTCTTTACTAGAATATCGGATGACTCTAGCTTTGCTAGTAAAGTTGGTGGTGTACTGGTTGAACCAAGCACTGATTTTCAGAAGAAGTTAAAGGGATTTTCTCCAGACCAAAAATTTCCACAAGCTCAATTCGCTCTTTATCATAATACCAGCTATGAATGGAATCCAATTGGTTCTGGTATTATGTGGAAATCCTACAATTTTCCTGTATTTTTACTCACAGAAAGTGGCTCAAAGACTCTTCAAGAGTTTGTAACAAAGAATGAGGACACAAAGAAATCTTATACTTCTAATGTGGCTGAGTTTGACCTGGTGATGCAGACAGTGAAATCTGGAACACATGATTCAGAGTCTTGTTTAAAAGAAGAAACTTGCCTTCCTTTAGGTGGATACAGTGTCTGGTCATCTCTTCCTCCGATCAACATTTCATCCTTACAACGGTCTAAGCCCATTTTATTGACAGTGGCATCTATGGATTCTGCTTCATTTTTTCGGGACAAAAGCCTTGGTGCAGACTCCCCTATTTCTGGTTTAATTGCATTACTAGCAGCTGTTGATGCACTTTCTCATTTGGATGGTCTTGGTGACCTTAGTAAACAGCTTGTTTTTGCAGTTTTCACTGGAGAGGCATGGGGTTACCTTGGAAGTAGGAGATTTTTGGTAGAACTTGACATGCACTCAGATGCTGTTCATGGCCTTAATCAGACATTAATTGAAACGGTCATTGAAATTGGTTCTGTTGGAAAGGGTCTCAGTCAAGGTGTTAAAAACTTTTTTGCTCATACAAAAGGGGATTCTTCTGCCACAAATCAGACAGTGGCTGCCTTGAAACGTGCACAGGAGTCACTGATATCTGAAAACATAAAGATAGCATCTGCAAGTGCCTCAAATCCTGGGATACCTCCATCCTCTTTAATGTCCTTTTTGGAAAAGAATCCTGCAATCTCTGGTGTTGTCCTAGAAGATTTTGACTCTGTCTTTGTCAACAAGTTCTACCATAGTCATCTTGATGATTTATCAAATGTAAATTCGTCAGCTGTAGTTGCTGCTGCTTCTCTCATTGCCCGAACCCTTTACATGCTCGCTAGTGAAACTGAAGATGTACAAAATTCAACTTTGGCTGCTATAAATGTTAATGTCTCACTTGTTGAACAACTTTTGGGTTGCTTGTTAGACTGTGATCCTGGTCTTTCTTGTGAATTGGTGAAGAAATATATTTCACCCATGTCAACATGTCCAAGCCATTATGTAGGTGTTATCTTGGACGAACCTTCATCTGCACCATATGCAGGATACATCAATGACGTTCCCAGGTTCATCTGGAATTTTCTGGCCGACAGAACTTCTATCCCAAGGGAGAATAATATCTCAGATTGTCAACATGGTTGCAATGGTAGAGATGAAGTTTGTGTCAAAGCAGAGACAGATGGCAAGGGAGTTTGTGTTCTCTCTACAACGAGGTATGTTCCAGCATATTCAACACGGCTAAAATTTGAATCAGGAGTGTGGAATGTTTTGCCCCCTAATTCCTCTGACAAAATGGGGGTTGTGGACCCTGTCTGGACAGAGAGCAACTGGAATACAATAGGTATGCGGGTCTACACAGTACAAAATGCTGCTTATGATCGTCTTGTTCTGTTTGGGGGCATCACTCTGACCGTCTTTGCATACCTTGCAATAGCAACCGCAAGAGCTTTTTTCAACAAAGCAATGAAGAGGGATTGA >Glyma18g04745.2 sequence type=CDS gene model=Glyma18g04745 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATCTCTCTGGAACCATCGGTTGTTCAAATCCTGGACGAGATAAGGTTGTGGCTCCGATTGTAAGATTCGAAAATGTTGACAGAATAGCTGAGCCTTCTGCTGTATTGGTGTCACTGGATGAGTTCCCAACTCTCTTTACTAGAATATCGGATGACTCTAGCTTTGCTAGTAAAGTTGGTGGTGTACTGGTTGAACCAAGCACTGATTTTCAGAAGAAGTTAAAGGGATTTTCTCCAGACCAAAAATTTCCACAAGCTCAATTCGCTCTTTATCATAATACCAGCTATGAATGGAATCCAATTGGTTCTGGTATTATGTGGAAATCCTACAATTTTCCTGTATTTTTACTCACAGAAAGTGGCTCAAAGACTCTTCAAGAGTTTGTAACAAAGAATGAGGACACAAAGAAATCTTATACTTCTAATGTGGCTGAGTTTGACCTGGTGATGCAGACAGTGAAATCTGGAACACATGATTCAGAGTCTTGTTTAAAAGAAGAAACTTGCCTTCCTTTAGGTGGATACAGTGTCTGGTCATCTCTTCCTCCGATCAACATTTCATCCTTACAACGGTCTAAGCCCATTTTATTGACAGTGGCATCTATGGATTCTGCTTCATTTTTTCGGGACAAAAGCCTTGGTGCAGACTCCCCTATTTCTGGTTTAATTGCATTACTAGCAGCTGTTGATGCACTTTCTCATTTGGATGGTCTTGGTGACCTTAGTAAACAGCTTGTTTTTGCAGTTTTCACTGGAGAGGCATGGGGTTACCTTGGAAGTAGGAGATTTTTGGTAGAACTTGACATGCACTCAGATGCTGTTCATGGCCTTAATCAGACATTAATTGAAACGGTCATTGAAATTGGTTCTGTTGGAAAGGGTCTCAGTCAAGGTGTTAAAAACTTTTTTGCTCATACAAAAGGGGATTCTTCTGCCACAAATCAGACAGTGGCTGCCTTGAAACGTGCACAGGAGTCACTGATATCTGAAAACATAAAGATAGCATCTGCAAGTGCCTCAAATCCTGGGATACCTCCATCCTCTTTAATGTCCTTTTTGGAAAAGAATCCTGCAATCTCTGGTGTTGTCCTAGAAGATTTTGACTCTGTCTTTGTCAACAAGTTCTACCATAGTCATCTTGATGATTTATCAAATGTAAATTCGTCAGCTGTAGTTGCTGCTGCTTCTCTCATTGCCCGAACCCTTTACATGCTCGCTAGTGAAACTGAAGATGTACAAAATTCAACTTTGGCTGCTATAAATGTTAATGTCTCACTTGTTGAACAACTTTTGGGTTGCTTGTTAGACTGTGATCCTGGTCTTTCTTGTGAATTGGTGAAGAAATATATTTCACCCATGTCAACATGTCCAAGCCATTATGTAGGTGTTATCTTGGACGAACCTTCATCTGCACCATATGCAGGATACATCAATGACGTTCCCAGGTTCATCTGGAATTTTCTGGCCGACAGAACTTCTATCCCAAGGGAGAATAATATCTCAGATTGTCAACATGGTTGCAATGGTAGAGATGAAGTTTGTGTCAAAGCAGAGACAGATGGCAAGGGAGTTTGTGTTCTCTCTACAACGAGATTAATGTATACTCGTTTTGCATCCTCCAAAGAGGTGGTGTCATCACTTGTCTCATCGTGTTCTACAATCTATACCATATTTAGACTTTACCTCACGAATTGGCGCCTTGTATGTTCCAGCATATTCAACACGGCTAAAATTTGA
>Glyma18g04745.1 sequence type=predicted peptide gene model=Glyma18g04745 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNLSGTIGCSNPGRDKVVAPIVRFENVDRIAEPSAVLVSLDEFPTLFTRISDDSSFASKVGGVLVEPSTDFQKKLKGFSPDQKFPQAQFALYHNTSYEWNPIGSGIMWKSYNFPVFLLTESGSKTLQEFVTKNEDTKKSYTSNVAEFDLVMQTVKSGTHDSESCLKEETCLPLGGYSVWSSLPPINISSLQRSKPILLTVASMDSASFFRDKSLGADSPISGLIALLAAVDALSHLDGLGDLSKQLVFAVFTGEAWGYLGSRRFLVELDMHSDAVHGLNQTLIETVIEIGSVGKGLSQGVKNFFAHTKGDSSATNQTVAALKRAQESLISENIKIASASASNPGIPPSSLMSFLEKNPAISGVVLEDFDSVFVNKFYHSHLDDLSNVNSSAVVAAASLIARTLYMLASETEDVQNSTLAAINVNVSLVEQLLGCLLDCDPGLSCELVKKYISPMSTCPSHYVGVILDEPSSAPYAGYINDVPRFIWNFLADRTSIPRENNISDCQHGCNGRDEVCVKAETDGKGVCVLSTTRYVPAYSTRLKFESGVWNVLPPNSSDKMGVVDPVWTESNWNTIGMRVYTVQNAAYDRLVLFGGITLTVFAYLAIATARAFFNKAMKRD* >Glyma18g04745.2 sequence type=predicted peptide gene model=Glyma18g04745 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNLSGTIGCSNPGRDKVVAPIVRFENVDRIAEPSAVLVSLDEFPTLFTRISDDSSFASKVGGVLVEPSTDFQKKLKGFSPDQKFPQAQFALYHNTSYEWNPIGSGIMWKSYNFPVFLLTESGSKTLQEFVTKNEDTKKSYTSNVAEFDLVMQTVKSGTHDSESCLKEETCLPLGGYSVWSSLPPINISSLQRSKPILLTVASMDSASFFRDKSLGADSPISGLIALLAAVDALSHLDGLGDLSKQLVFAVFTGEAWGYLGSRRFLVELDMHSDAVHGLNQTLIETVIEIGSVGKGLSQGVKNFFAHTKGDSSATNQTVAALKRAQESLISENIKIASASASNPGIPPSSLMSFLEKNPAISGVVLEDFDSVFVNKFYHSHLDDLSNVNSSAVVAAASLIARTLYMLASETEDVQNSTLAAINVNVSLVEQLLGCLLDCDPGLSCELVKKYISPMSTCPSHYVGVILDEPSSAPYAGYINDVPRFIWNFLADRTSIPRENNISDCQHGCNGRDEVCVKAETDGKGVCVLSTTRLMYTRFASSKEVVSSLVSSCSTIYTIFRLYLTNWRLVCSSIFNTAKI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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