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Report for Sequence Feature Glyma18g04580

Feature Type:gene_model
Chromosome:Gm18
Start:3351228
stop:3353893
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G16600AT Annotation by Michelle Graham. TAIR10: myb domain protein 43 | chr5:5438291-5440214 FORWARD LENGTH=327 SoyBaseE_val: 3.00E-96ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:2000652GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of secondary cell wall biogenesis SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
KOG0048 KOG Transcription factor, Myb superfamily JGI ISS
PTHR10641Panther MYB-RELATED JGI ISS
PF00249PFAM Myb-like DNA-binding domain JGI ISS
UniRef100_G7K1N8UniRef Annotation by Michelle Graham. Most informative UniRef hit: P-type R2R3 Myb protein n=1 Tax=Medicago truncatula RepID=G7K1N8_MEDTR SoyBaseE_val: 1.00E-132ISS
UniRef100_I1MZE8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MZE8_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g04580 not represented in the dataset

Glyma18g04580 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma11g33620 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g040700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g04580.1   sequence type=CDS   gene model=Glyma18g04580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGGCAACCTTGCTGTGACAAAGTGGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAGGATAAGAAACTCATCAATTTCATCCTCACTAATGGTCAATGTTGCTGGAGAGCTCTCCCTAAACTAGCAGGGCTGTTAAGATGTGGAAAAAGTTGCAGGCTCAGGTGGACAAATTACCTGAGGCCAGACCTGAAGAGAGGCCTTCTATCAGAATATGAAGAGAAAATGGTCATTGATCTTCATGCTCAACTTGGCAATAGATGGTCTAAGATTGCTTCTCATCTCCCAGGAAGAACCGATAATGAGATCAAGAATCACTGGAATACCCACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCTGTTACTCACAAGCCACTTTCCAATAAAACTGAGGAAACTCAAGCCCAACCAGATGAACAAACCCATCAACCATTGCAAGAACAACAACAACAACAACATCAACATCAACAACAACCTATCCCAGTTGAGAAAGACCTCAAATTTGAACCTGAAAAGGAGCAAAACAGGGAGCCAGAGACTTCAGTTGAATCATCAACCATCACTGAAGAAGTTAAGGAGGAAGACCAAATCATGACACCCCTATTTGACTCATGGGAACTAATGAATGAGTTCTGCACTGATGAAGCTCCCATAATAGAACCAAATGAGATTCTAGTTCCTTCTGCTCCTTCTTCCGCTTCACCAACCACTACTACTATATCATCTTCAACATCAACATCCTCTTATTCAAATTCATCCAACTTCCTTGAAGACCTGCTGCTCCCAGATTTGGAGTGGTCTGATGATTACAATGATACTAATTTTGACAACAATAGCAGCATGGCCTTGTGGGATGATGACTTTATTGGAAGTTGGAATTCGCTTATTAATGGTGATGGTGATAGAAAGCAAGTGTTTGACGCTCCTATCAATCAGTACCCAAGTGTGATCATGGATTCAGATTCTTGGGACTATGGCTTGTTTTGA

>Glyma18g04580.1   sequence type=predicted peptide   gene model=Glyma18g04580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRALPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKPLSNKTEETQAQPDEQTHQPLQEQQQQQHQHQQQPIPVEKDLKFEPEKEQNREPETSVESSTITEEVKEEDQIMTPLFDSWELMNEFCTDEAPIIEPNEILVPSAPSSASPTTTTISSSTSTSSYSNSSNFLEDLLLPDLEWSDDYNDTNFDNNSSMALWDDDFIGSWNSLINGDGDRKQVFDAPINQYPSVIMDSDSWDYGLF*







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