SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G66250 | AT | Annotation by Michelle Graham. TAIR10: O-Glycosyl hydrolases family 17 protein | chr1:24693063-24695416 FORWARD LENGTH=505 | SoyBase | E_val: 0 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0031225 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane | SoyBase | N/A | ISS |
| GO:0046658 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to plasma membrane | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| GO:0043169 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cation binding | SoyBase | N/A | ISS |
| PTHR16631 | Panther | GLUCAN 1,3-BETA-GLUCOSIDASE-RELATED | JGI | ISS | |
| PTHR16631:SF1 | Panther | GLUCAN 1,3-BETA-GLUCOSIDASE | JGI | ISS | |
| PF00332 | PFAM | Glycosyl hydrolases family 17 | JGI | ISS | |
| PF07983 | PFAM | X8 domain | JGI | ISS | |
| UniRef100_G7K1P2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glucan endo-1,3-beta-glucosidase n=1 Tax=Medicago truncatula RepID=G7K1P2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E5A2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E5A2 related cluster n=1 Tax=unknown RepID=UPI000233E5A2 | SoyBase | E_val: 0 | ISS |
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Glyma18g04560 not represented in the dataset |
Glyma18g04560 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g33650 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g040600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g04560.1 sequence type=CDS gene model=Glyma18g04560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCAAGCACTTTCTTCTGCTTCTTTTTGCAGTATATGTTGCCGCTATTGATGAAGAACCTTTTATAGGGGTGAATATTGGTAGAGATCTCTCAGACATGCCTCACCCCACTCAAGTAGTAGCACTACTTAAAGCCCAGCAAATTCGACATGTTAGGCTGTATGATGCCGACCAAGCTATGCTCATTGCTCTTGCAAACACAAGAATTCAAGTTGCTGTGTCTGTCCCTAATCAAGAGATCCTTGCAATTGGTCAATCAAATACCACAGCTGCGAAATGGGTTTCCCATAATGTGATAGCACATTACCCTGCCACTAACATAACTACTATTTGTGTTGGTTCTGATGTCTTAACTACCCTCCCCTATGCAGCAAAAGTGCTTGTCAGTGCCCTTAAGTTCATTCACTCAGCCCTCGTGGCATCCAATCTTGATCACCAAATCAAAGTCTCAACACCCCTTTCCTCTTCCATGATCCTTGATTCATTTCCACCTTCACAAGCCTTCTTCAACCGCTCACTGAATCCAGTCTTGGTTCCAATGCTTGATTTCTTGCAAACCACTGGCTCTTATCTCATGCTCAACATCTACCCTTACTATGACTACATGCAGTCGAATGGTGTGATTCCATTGGACTATGCACTCTTCAAACCCCTCCCTCCAAACAAAGAAGCCATTGATTCCAATTCCCTTCTCCACTACTCCAATGTGTTTGATGCTGCGGTTGATGCTGCATACGTTGCCATGGCTTTTCTAAATTACACTAACATTCGTGTGGTGGTGACAGAAACAGGCTGGCCCTCAAAAGGTGACTCTAATGAGCCTGATGCAACAGTGGAAAATGCAAACACTTACAACAGCAATTTGATCAAGCATGTGCTTAACATAACCGGGACTCCGAAACACCCCGGAATTGGTGTTAGTACTTACATCTATGAGCTCTACAATGAGGATGCAAAGGCAGGGCCATTGTCAGAGAAGAACTGGGGTTTGTTTGATGCAAATGGTAAACCTGTTTATGTTTTGCACTTGACAGAATCAGGAGGAGTGTTGGCAAATGACACCACCAATCAAACTTACTGTGTTGCAAAGGATGGTGCTGATCCTAAGATGCTGCAGGCTGGAATAGATTGGGCATGTGGACCTGGCAAGGTGGATTGCTCTCCTTTGCTGCAAGGACAACCATGTTATGAACCAGACAATGTGGTGGCACATGCAAATTATGCTTTTGACACTTACTATCATCAGATGGGAAAGTCTCCTCAGTCTTGTGATTTCAATGGCATGGCTACAATCTCCACCACCAATCCAAGTCATGGATCCTGTGTATTTCCAGGAAGTCTTGGCAACAATGGCACCTTCCCCAACGTCACGTTATCATCAATGAATTCCACAAATTCAGATTCTTCTGCCTGCAATCTCCATAGTGGTGAATTGGGAATTAGAAGCCTTCTAATGGTGATAGTACTTCTACTATGGGGAGTGGCTTTGCTATAA
>Glyma18g04560.1 sequence type=predicted peptide gene model=Glyma18g04560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKHFLLLLFAVYVAAIDEEPFIGVNIGRDLSDMPHPTQVVALLKAQQIRHVRLYDADQAMLIALANTRIQVAVSVPNQEILAIGQSNTTAAKWVSHNVIAHYPATNITTICVGSDVLTTLPYAAKVLVSALKFIHSALVASNLDHQIKVSTPLSSSMILDSFPPSQAFFNRSLNPVLVPMLDFLQTTGSYLMLNIYPYYDYMQSNGVIPLDYALFKPLPPNKEAIDSNSLLHYSNVFDAAVDAAYVAMAFLNYTNIRVVVTETGWPSKGDSNEPDATVENANTYNSNLIKHVLNITGTPKHPGIGVSTYIYELYNEDAKAGPLSEKNWGLFDANGKPVYVLHLTESGGVLANDTTNQTYCVAKDGADPKMLQAGIDWACGPGKVDCSPLLQGQPCYEPDNVVAHANYAFDTYYHQMGKSPQSCDFNGMATISTTNPSHGSCVFPGSLGNNGTFPNVTLSSMNSTNSDSSACNLHSGELGIRSLLMVIVLLLWGVALL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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