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Report for Sequence Feature Glyma18g04510

Feature Type:gene_model
Chromosome:Gm18
Start:3299878
stop:3305338
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g04510
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G16710AT Annotation by Michelle Graham. TAIR10: dehydroascorbate reductase 1 | chr5:5483312-5484926 FORWARD LENGTH=258 SoyBaseE_val: 6.00E-125ISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0010731GO-bp Annotation by Michelle Graham. GO Biological Process: protein glutathionylation SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0045174GO-mf Annotation by Michelle Graham. GO Molecular Function: glutathione dehydrogenase (ascorbate) activity SoyBaseN/AISS
KOG1422 KOG Intracellular Cl- channel CLIC, contains GST domain JGI ISS
PTHR11260Panther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING JGI ISS
PTHR11260:SF15Panther GLUTATHIONE-S-TRANSFERASE-RELATED JGI ISS
PF02798PFAM Glutathione S-transferase, N-terminal domain JGI ISS
UniRef100_C6TGU0UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TGU0_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q4JR86UniRef Annotation by Michelle Graham. Most informative UniRef hit: Dehydroascorbate reductase n=1 Tax=Glycine max RepID=Q4JR86_SOYBN SoyBaseE_val: 2.00E-179ISS

Expression Patterns of Glyma18g04510
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g04510
ParalogEvidenceComments
Glyma11g33700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g04510 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g040100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g04510
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g04510
>Glyma18g04510.1   sequence type=CDS   gene model=Glyma18g04510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGCTGTGAGAGTTCAAGTTTCGGCGTGTGCGGTTTCCGCCACCGTCAACCACCTTCGCCTCCGCCAAAACGCCGTCGTTTCCTTCAGGAAGAAGAAGCCTCTCACTCTCAGAGTGGTCTCAATGTCTTCCGTTCCTCCTTCCCAACCCTTCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACTGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCTTATGACCCCAAGTTGGTGGATTTGACCAACAAGCCAGAATGGTTCCTTAAAGTCAACCCTGATGGTAAAGTTCCTGTCATAAAGTTTGATGAGAAGTGGGTTCCTGATTCAGATGTTATTACTCAAACATTGGAAGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAGCGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATCCCAATGATGGAACAGAGCAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAATGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGACCAAAGCTATACCATTTGGAGATTGCTTTGGGGCATTATAAGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTCTTATATGAAGGCCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGATGTCATTGAAGGTTGGCGTCCTAAAGTGGAAGGCTAA
Predicted protein sequences of Glyma18g04510
>Glyma18g04510.1   sequence type=predicted peptide   gene model=Glyma18g04510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAVRVQVSACAVSATVNHLRLRQNAVVSFRKKKPLTLRVVSMSSVPPSQPFEIAVKASVTTPNRLGDCPFCQRVLLTLEEKHLPYDPKLVDLTNKPEWFLKVNPDGKVPVIKFDEKWVPDSDVITQTLEEKYPSPPLVTPPERATAGSKIFSTFIGFLKSKDPNDGTEQALLSELSSFNDYIKENGPFINGSEISAADLSLGPKLYHLEIALGHYKKWTVPDSLTSLKSYMKAIFSRESFVKTSAQPQDVIEGWRPKVEG*






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