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Report for Sequence Feature Glyma18g04500

Feature Type:gene_model
Chromosome:Gm18
Start:3267387
stop:3269967
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g04500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G03450AT Annotation by Michelle Graham. TAIR10: RGA-like 2 | chr3:819636-821279 REVERSE LENGTH=547 SoyBaseE_val: 0ISS
GO:0009062GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009686GO-bp Annotation by Michelle Graham. GO Biological Process: gibberellin biosynthetic process SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009739GO-bp Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus SoyBaseN/AISS
GO:0009740GO-bp Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0009938GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of gibberellic acid mediated signaling pathway SoyBaseN/AISS
GO:0010029GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of seed germination SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0010187GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of seed germination SoyBaseN/AISS
GO:0010325GO-bp Annotation by Michelle Graham. GO Biological Process: raffinose family oligosaccharide biosynthetic process SoyBaseN/AISS
GO:0042538GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response SoyBaseN/AISS
GO:0048444GO-bp Annotation by Michelle Graham. GO Biological Process: floral organ morphogenesis SoyBaseN/AISS
GO:0048608GO-bp Annotation by Michelle Graham. GO Biological Process: reproductive structure development SoyBaseN/AISS
GO:2000033GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of seed dormancy process SoyBaseN/AISS
GO:2000377GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of reactive oxygen species metabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF03514PFAM GRAS family transcription factor JGI ISS
PF12041PFAM Transcriptional regulator DELLA protein N terminal JGI ISS
UniRef100_A5HVE5UniRef Annotation by Michelle Graham. Most informative UniRef hit: DELLA protein n=1 Tax=Phaseolus vulgaris RepID=A5HVE5_PHAVU SoyBaseE_val: 0ISS
UniRef100_I1MZE2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MZE2_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g04500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g04500
ParalogEvidenceComments
Glyma11g33720 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g04500 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g040000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g04500
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g04500
>Glyma18g04500.1   sequence type=CDS   gene model=Glyma18g04500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAGGGATCACCGAGATAGCTGCGGCGGCGGCGGCGGAGGGAGTGTGAAGGGTGAGTGTTCCTCAATGCCGTCGAACGGGAAGGCAAATATGTGGGAGGAACAACAACAACAACAACAGGGGATGGACGAGTTGCTGGCGGCGTTGGGGTACAAGGTTCGTGCTTCCGACATGGCCGACGTGGCACAGAAGCTGGAGCAGTTGGAGATGGTCATGGGTTGTGCCCAGGAAGAGGGAATTTCCCACCTCGCCTCCGACACCGTCCACTACGATCCCACGGATCTTTATTCCTGGGTCCAAACCATGTTAACCGAACTCAACCCTGAACCCAACAACAACAACAATAGCCTCCTCGGTCCATCTTCTCTCTTAATCGACAACAACACCGCCCCTGTTTTCAACGACGATTCCGAATATGACCTCAGAGCCATTCCTGGTATTGCAGCCTACCCTCCTCCTCCTCCACAAGACAACAACAACAACAACAACAACCTCGACGAAATCGAAACAGCTAACAACATCAACAAGCGTCTCAAGCCATCTCCAGTTGAATCAGCAGACTCCGCGTCTGAGCCCACGCGCACGGTGCTGCTCGTTGACCATCAGGAAGCCGGCGTGCGTCTGGTCCACACTCTCCTGGCGTGCGCGGAGGCCGTCCAGCAGGAGAATCTGAAGCTGGCCGACGCGCTCGTCAAGCACGTGGGCATACTCGCGGCTTCTCAAGCCGGCGCCATGAGGAAGGTGGCTTCCTACTTCGCCCAAGCCCTCGCGCGTCGTATCTACGGAATCTTCCCGGAAGAAACCCTCGACTCCTCCTTCTCCGACGTTCTCCACATGCACTTCTACGAGTCCTGCCCTTACCTCAAATTCGCGCACTTCACCGCGAATCAGGCTATCCTCGAAGCATTTGCCACTGCTGGGAGAGTCCACGTCATCGATTTCGGCCTCAGACAAGGGATGCAGTGGCCTGCACTCATGCAAGCCCTTGCATTGCGGCCCGGCGGGCCCCCGACTTTCCGTCTAACCGGAATCGGCCCGCCGCAGCCCGACAACACCGACGCGCTGCAGCAAGTGGGCTGGAAATTAGCCCAATTGGCCCAGAACATCGGCGTCCAGTTCGAATTCCGCGGCTTCGTTTGCAACAGCCTCGCGGATCTCGACCCGAAAATGCTCGAGATCCGACCCGGAGAAGCCGTCGCTGTCAACTCGGTTTTCGAGCTCCATCGTATGCTGGCCCGCCCCGGATCCGTCGACAAGGTCTTGGACACTGTTAAGAAAATCAAGCCGAAGATTGTCACCATCGTGGAACAAGAAGCGAACCACAACGGACCGGGTTTTCTTGACCGGTTCACTGAGGCCTTGCATTACTACTCCAGCCTATTCGACTCGCTGGAGGGTTCGTCCTCTTCGACCGGGTTGGGCTCACCAAATCAGGATCTGTTAATGTCCGAGTTGTACCTGGGGAGACAAATATGCAACGTGGTGGCTAACGAGGGCGCGGACCGGGTAGAGCGTCACGAGACTTTGAGTCAGTGGAGGGGGAGATTGGACTCGGCCGGGTTCGACCCGGTTCATCTCGGGTCCAACGCGTTCAAGCAAGCGAGTATGCTACTTGCTCTATTCGCAGGCGGTGACGGCTATAGGGTTGAGGAGAATAACGGCTGCCTCATGCTTGGCTGGCACACTCGGCCACTCATCGCTACCTCCGCCTGGAAGCTTCCCTCCCCGAACGACTTGCACTGTAAACTGTAG
Predicted protein sequences of Glyma18g04500
>Glyma18g04500.1   sequence type=predicted peptide   gene model=Glyma18g04500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKRDHRDSCGGGGGGSVKGECSSMPSNGKANMWEEQQQQQQGMDELLAALGYKVRASDMADVAQKLEQLEMVMGCAQEEGISHLASDTVHYDPTDLYSWVQTMLTELNPEPNNNNNSLLGPSSLLIDNNTAPVFNDDSEYDLRAIPGIAAYPPPPPQDNNNNNNNLDEIETANNINKRLKPSPVESADSASEPTRTVLLVDHQEAGVRLVHTLLACAEAVQQENLKLADALVKHVGILAASQAGAMRKVASYFAQALARRIYGIFPEETLDSSFSDVLHMHFYESCPYLKFAHFTANQAILEAFATAGRVHVIDFGLRQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNTDALQQVGWKLAQLAQNIGVQFEFRGFVCNSLADLDPKMLEIRPGEAVAVNSVFELHRMLARPGSVDKVLDTVKKIKPKIVTIVEQEANHNGPGFLDRFTEALHYYSSLFDSLEGSSSSTGLGSPNQDLLMSELYLGRQICNVVANEGADRVERHETLSQWRGRLDSAGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWKLPSPNDLHCKL*






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