Report for Sequence Feature Glyma18g04470
Feature Type: gene_model
Chromosome: Gm18
Start: 3220705
stop: 3223376
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g04470
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G37740 AT
Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein | chr5:14992148-14993431 FORWARD LENGTH=168
SoyBase E_val: 2.00E-81 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG1030
KOG
Predicted Ca2+-dependent phospholipid-binding protein
JGI ISS
PTHR26357 Panther
FAMILY NOT NAMED
JGI ISS
PTHR26357:SF5 Panther
JGI ISS
PF00168 PFAM
C2 domain
JGI ISS
UniRef100_B9T6Z1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: ARF GTPase activator, putative n=1 Tax=Ricinus communis RepID=B9T6Z1_RICCO
SoyBase E_val: 2.00E-86 ISS
UniRef100_UPI00018C678A UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI00018C678A related cluster n=1 Tax=unknown RepID=UPI00018C678A
SoyBase E_val: 2.00E-116 ISS
Expression Patterns of Glyma18g04470
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g04470
Paralog Evidence Comments
Glyma11g33760 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g04470 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g039700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g04470
Transcripts of Glyma18g04470
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g04470.2 sequence type=transcript gene model=Glyma18g04470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AAAGAGAGAAGAAGTCCTAAAAAAATAATAGAGAGAACCTTATACAGATTATAAATAGCTGCAACCACTTTGGTTGACTCATACAGGTCCCTTGGAGCCACTTGTCCTGTATTGAAAATCCATTTTGCTTCATTTCATTCCCTCACATAGTGTTTTTTTCTTTCCATGGAGAACTTGTTGGGTCTGCTGAGAATTCATGTTGAAAAAGGTGTCAATCTTGCCATCAGGGATGTGGTGAGCAGTGACCCTTATGTTGTCATCAAAATGGGAAGGCAGGTACCAAGAATTGAAATGAGGAAGAAAATAGGAGAGAAAACTCTCCTCCAAGGGTTTCCCCTTCACAAAGGATTTCTCCTTTCACAAAGAGCTAATGCTCAATCTACAAATGATAAGATTCCCCTCTCTCCTATCCTTCTTTCTCTATTTATATCTAATAAACCCCTCTAACTAACTAACTAACTCATTAGTAGTTTAACTATATTAACTAACTCTTCCTTCTCCTTATATCCTAACACAAATAGTAGACGGGTAGAAACCTTGTGTGTTTCTTGTTTTCTGAACTCTGAACATTCAATTCATTACTGCATTTTATGTCTCATATGCAGAAGCTGAAGACTCGGGTAGTCAAGAAGAATCTAAATCCTGAATGGAATGATGACTTGACCTTGTCTATTTCAGACCCTCATGCTCCAATTCATCTACATGTGTATGACAAGGACACATTTAGCATGGATGACAAAATGGGGGATGCTGAGTTTTTCATAGGTCCATTTATTGAAGCAGTGAAGATGCGCTTGTCAGGTCTCCCCAACAATACTATAGTTACAAAAGTGCTACCTAGCAGACAAAACTGTTTAGCTGAAGAGAGTCACATAATGTTGAAGGATGGCAAGGTTGTCCAAAACATGGTTCTTAGACTAAGAAATGTTGAGAGTGGGGAAGTGGAGCTCCAGTTGCATTGGATTGACATTCCTGGTTCAAGACATCTCTAGATCACAGTCCAAAACATGGTTCTTAGATTTGCCATATTGTAAAAATTAGATTTGCAGCCTCATAAACCAGCAGGCAGCTGCACCTTATGCTTTAATTTCTCCTATCCTTTTATCTCGTTCGCATAACTTAAAATTGTTCAATATGTTGGTTTGTAATCGGTGTTATTGCAATTACTAGGATTAGTAGTTAGTGAAAAAGAATGGGAGATGTAGTTTCCCTAGCTGTAATTTAAACTTTGAATTATCTGCTACTGCTAGTCTTGTGTAATAATGTACATGAAATGTACCAGAAAGATGCTGCACTTAATTAGAATCTCCTTAGTTAACATGTTAATCGCGTGATGATATAATGGTTCTATGATAACT
Coding sequences of Glyma18g04470
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g04470.1 sequence type=CDS gene model=Glyma18g04470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGAACTTGTTGGGTCTGCTGAGAATTCATGTTGAAAAAGGTGTCAATCTTGCCATCAGGGATGTGGTGAGCAGTGACCCTTATGTTGTCATCAAAATGGGAAGGCAGAAGCTGAAGACTCGGGTAGTCAAGAAGAATCTAAATCCTGAATGGAATGATGACTTGACCTTGTCTATTTCAGACCCTCATGCTCCAATTCATCTACATGTGTATGACAAGGACACATTTAGCATGGATGACAAAATGGGGGATGCTGAGTTTTTCATAGGTCCATTTATTGAAGCAGTGAAGATGCGCTTGTCAGGTCTCCCCAACAATACTATAGTTACAAAAGTGCTACCTAGCAGACAAAACTGTTTAGCTGAAGAGAGTCACATAATGTTGAAGGATGGCAAGGTTGTCCAAAACATGGTTCTTAGACTAAGAAATGTTGAGAGTGGGGAAGTGGAGCTCCAGTTGCATTGGATTGACATTCCTGGTTCAAGACATCTCTAG
>Glyma18g04470.2 sequence type=CDS gene model=Glyma18g04470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCTCATATGCAGAAGCTGAAGACTCGGGTAGTCAAGAAGAATCTAAATCCTGAATGGAATGATGACTTGACCTTGTCTATTTCAGACCCTCATGCTCCAATTCATCTACATGTGTATGACAAGGACACATTTAGCATGGATGACAAAATGGGGGATGCTGAGTTTTTCATAGGTCCATTTATTGAAGCAGTGAAGATGCGCTTGTCAGGTCTCCCCAACAATACTATAGTTACAAAAGTGCTACCTAGCAGACAAAACTGTTTAGCTGAAGAGAGTCACATAATGTTGAAGGATGGCAAGGTTGTCCAAAACATGGTTCTTAGACTAAGAAATGTTGAGAGTGGGGAAGTGGAGCTCCAGTTGCATTGGATTGACATTCCTGGTTCAAGACATCTCTAG
Predicted protein sequences of Glyma18g04470
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g04470.1 sequence type=predicted peptide gene model=Glyma18g04470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MENLLGLLRIHVEKGVNLAIRDVVSSDPYVVIKMGRQKLKTRVVKKNLNPEWNDDLTLSISDPHAPIHLHVYDKDTFSMDDKMGDAEFFIGPFIEAVKMRLSGLPNNTIVTKVLPSRQNCLAEESHIMLKDGKVVQNMVLRLRNVESGEVELQLHWIDIPGSRHL*
>Glyma18g04470.2 sequence type=predicted peptide gene model=Glyma18g04470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSHMQKLKTRVVKKNLNPEWNDDLTLSISDPHAPIHLHVYDKDTFSMDDKMGDAEFFIGPFIEAVKMRLSGLPNNTIVTKVLPSRQNCLAEESHIMLKDGKVVQNMVLRLRNVESGEVELQLHWIDIPGSRHL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
