SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G03380 | AT | Annotation by Michelle Graham. TAIR10: DegP protease 7 | chr3:799720-808319 FORWARD LENGTH=1097 | SoyBase | E_val: 0 | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0010205 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoinhibition | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004252 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity | SoyBase | N/A | ISS |
| GO:0008233 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peptidase activity | SoyBase | N/A | ISS |
| GO:0008236 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity | SoyBase | N/A | ISS |
| PTHR22939 | Panther | SERINE PROTEASE FAMILY S1C HTRA-RELATED | JGI | ISS | |
| PTHR22939:SF15 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00595 | PFAM | PDZ domain (Also known as DHR or GLGF) | JGI | ISS | |
| UniRef100_B9T3Z6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9T3Z6_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E9F4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E9F4 related cluster n=1 Tax=unknown RepID=UPI000233E9F4 | SoyBase | E_val: 0 | ISS |
|
Glyma18g04400 not represented in the dataset |
Glyma18g04400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g33880 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g039000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g04400.1 sequence type=CDS gene model=Glyma18g04400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGATCCAGCGGAGAGCTTCGGATCGGAAGGTTTGGATTCCGCCGCCGCCGTTAAGACCGACGACCTTTGTATGGAAATCGATCCGCCATTTCAGGAAAACGTCGCCACCGCCGAGGACTGGCGGAAAGCTCTCAACAGAGTCGTCCCTGCCGTCGTCGTCCTCCGCACCACTGCCACTCGCTCCTTCGACACCGAGTCCGCCGCCGCCAGCTACGCCACCGGCTTCATCGTCGACAAGCGCCGCGGCATCATTCTCACCAATCGCCACGTCGTCAAGCCAGGTCCGGTGGTTGCAGAAGCGATGTTTCTGAACCGCGAAGAGGTTCCGGTTCATCCGATTTACAGAGATCCGGTACATGATTTTGGGTTCTTTCGTTATGATCCTGGTGCTATACAATTTCTGAACTATGAGGAGATACCACTTGCTCCTGAAGCTGCCTGTGTAGGACTAGAAATCAGAGTTGTTGGTAATGATAGTGGTGAGAAGGTTTCCATTTTGGCTGGTACTCTTGCTCGTTTGGATAGGGATGCTCCTCATTATAAGAAGGATGGGTATAATGACTTCAACACATTCTATATGCAAGCAGCATCTGGGACCAAAGGAGGGTCAAGTGGTTCCCCAGTTATAGATTGGCAAGGCAGGGCAGTGGCCCTGAATGCTGGGAGCAAGTCATCAAGTGCATCAGCATTCTTTCTGCCTCTAGAACGAGTTGTGAGGGCATTGAGGTTTCTTCAAAAGGGAAGTGAAACTTATGTTGATAAATGGAAGGCAGTTTCTATACCTCGTGGTACACTTCAGATGACATTTCTCCATAAAGGGTTTGATGAGACTCGTCGACTTGGCCTCAGAAGTGAGACAGAGCAGATAGTACGTCATGCTTCTCCAGCTGGTGAAACTGGAATGCTCGTTGTGGACTCTGTGGTGCCAGGTGGTCCGGGTTATAAACACTTGGAACCGGGTGATGTTGTTGTTCGTGTCAATGGAGAAGTCATTACTCAATTTCTGAAACTTGAGACTCTACTTGATGACAGTGTAAACAAGAATATTGAATTACAAATTGAAAGGGGTGGCACATCTAAGAGTTTAACATTGTCGGTGCAAGATTTGCACTCAATAACGCCTGATTATTTCTTAGAAGTGAGTGGGGCAGTAATACATCCTCTTTCTTATCAGCAGGCTAGAAACTTCCGTTTCCATTGTGGTCTTGTTTATGTGGCTGAACCAGGATATATGCTCTTCAGAGCAGGAGTTCCTCGCCATGCAATAATTAAGAAATTTGCTGGTGAAGAAATATCATGTCTTGATGAACTAATATCAGTTCTTTCTAAGCTATCCAGGGGTGCTCGAGTACCATTGGAATATATAAGCTACACTGATCGTCATCGAAGGAAGTCTGTTTTAGTGACCGTTGATAGGCATGAATGGTATGTACCACCCCAGATATACACTCGTGATGACAGTACTGGCCTTTGGAATGCTAAACCTGCTTTTAAGCTTGATTCCCCCTTCCTATCATTGGGTGCTAAAGATGTTGACAATCTGTCTAGACAGCCAGTTTCACTAACTGGTGAGCGTGCTTGTGGGGGACATGTGTTTGGAGATAACAATCAGGAGTTTGTTGATGGTGTCACTAGCATGGAAACCAATTGTGAAGATCCCTCAGAGTGTGTATCTCACCACAATGCATCTGATGGTGTGGTGAAAAAACGAAAAGTGGAGGAAGATTTATCAGCTGATGGAAATCTTGTTGCTGATTTTTCCTTAAATGATACCAGGGAAACTAAGCTAGAAAAATCAAGTATTATACAGGATGACATGTTAATGGACTATCAGGGTGCAACTGCAGCTACAGCAAATGCGTCAGTTGCTGAACGTGTGATCGAGCCGACTCTTGTGATGTTTGAGGTTCATGTTCCCCCATCTTGTATGCTTGATGGTGTTCATTCACAGCACTTTTTTGGAACTGGTGTCATAATTTATCACTCCCAAGATATGGGATTAGTTGCAGTTGACAAGAATACAGTTGCAATATCTGCCTCTGATGTAATGCTATCTTTCGCCGCCTTCCCTGTTGAAATTCCAGGAGAGGTGGTATTTCTCCATCCTGTTCACAATTATGCCCTCATATCATATGATCCCTCAGCATTGGGACCCGTTGGGGGTTCAGTTGTTCGTGCTGCAGAGTTACTTCCAGAGCCAGCATTACGCCGGGGTGATTCTGTTTATCTTGTGGGGTTGAGTAGAAGCCTACAAGCAACTTCTAGAAAATCAGTTGTTACCAATCCTTGTGCTGCATTAAATATAGGATCTGCTGATTCCCCTCGCTATAGGGCAACCAATATGGAAGTAATTGAGCTTGATACAGATTTTGGCAGTACATTTTCGGGTGTGCTAACAGACGAACAAGGAAGGGTCCAAGCTATATGGGGAAGCTTCTCAACTCAGCTGAAATTTGGTTGCAGCACCTCAGAAGATCATCAATTTGTGAGGGGTATTCCAATTTATGCAATAAGTCAGGTCCTTGACAAGATTATATCAGGTGCAAATGGGTCACCTCTTCTTATAAATGGTGTCAAAAGGCCTATGCCACTTGTGAGAATTCTAGAGGTTGAACTTTATCCAACATTGCTTTCAAAGGCTCGGAGTTTTGGATTAAGTGATGATTGGATTCAGGCACTTGTTAAGAAAGATCCAGTAAGACGTCAGGTTTTACGTGTTAAAGGTTGTTTGGCTGGATCAAAGGCTGAGAATCTTTTAGAACAAGGGGACATGGTTTTAGCAATCAACAAAGAACCAGTGACATGCTTCCGTGACATCGAAAATGCTTGCCAAGCTTTAGACAAATCCGACGCCAATGATGGGAAGCTTCACTTGACTATTTTCCGGCAGGGACAAGAGGTTGAACTTTTTGTGGGAACAGATGTTAGGGATGGAAATGGTACTGCTCGTGCAATTAATTGGTGTGGTTGTATTGTCCAAGATCCACATCCAGCAGTGCGTGCTCTTGGATTTCTTCCCGAAGAAGGTCATGGTGTATATGTGGCAAGGTGGTGTCATGGGAGTCCTGTACATAGATATGGTCTATATGCTCTTCAGTGGATAGTTGAAATTAATGGAAAACCAACTCCAAATATAGATTCTTTCGTTAATGTGACAAAGGAACTAGAACATGGCGAGTTTGTTCGTGTAAAGACAATTCACCTCAATGGGAAGCCACGAGTCCTAACATTGAAGCAAGATTTGCATTACTGGCCTACGTGGGAATTGAGATTTGATCCTAATAGTGCGATGTGGCATCGCAATATAATCAAGGGATTGAACTGCAGTACGGTCTGA
>Glyma18g04400.1 sequence type=predicted peptide gene model=Glyma18g04400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGDPAESFGSEGLDSAAAVKTDDLCMEIDPPFQENVATAEDWRKALNRVVPAVVVLRTTATRSFDTESAAASYATGFIVDKRRGIILTNRHVVKPGPVVAEAMFLNREEVPVHPIYRDPVHDFGFFRYDPGAIQFLNYEEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSSSASAFFLPLERVVRALRFLQKGSETYVDKWKAVSIPRGTLQMTFLHKGFDETRRLGLRSETEQIVRHASPAGETGMLVVDSVVPGGPGYKHLEPGDVVVRVNGEVITQFLKLETLLDDSVNKNIELQIERGGTSKSLTLSVQDLHSITPDYFLEVSGAVIHPLSYQQARNFRFHCGLVYVAEPGYMLFRAGVPRHAIIKKFAGEEISCLDELISVLSKLSRGARVPLEYISYTDRHRRKSVLVTVDRHEWYVPPQIYTRDDSTGLWNAKPAFKLDSPFLSLGAKDVDNLSRQPVSLTGERACGGHVFGDNNQEFVDGVTSMETNCEDPSECVSHHNASDGVVKKRKVEEDLSADGNLVADFSLNDTRETKLEKSSIIQDDMLMDYQGATAATANASVAERVIEPTLVMFEVHVPPSCMLDGVHSQHFFGTGVIIYHSQDMGLVAVDKNTVAISASDVMLSFAAFPVEIPGEVVFLHPVHNYALISYDPSALGPVGGSVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSVVTNPCAALNIGSADSPRYRATNMEVIELDTDFGSTFSGVLTDEQGRVQAIWGSFSTQLKFGCSTSEDHQFVRGIPIYAISQVLDKIISGANGSPLLINGVKRPMPLVRILEVELYPTLLSKARSFGLSDDWIQALVKKDPVRRQVLRVKGCLAGSKAENLLEQGDMVLAINKEPVTCFRDIENACQALDKSDANDGKLHLTIFRQGQEVELFVGTDVRDGNGTARAINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKPTPNIDSFVNVTKELEHGEFVRVKTIHLNGKPRVLTLKQDLHYWPTWELRFDPNSAMWHRNIIKGLNCSTV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
