SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G37850 | AT | Annotation by Michelle Graham. TAIR10: pfkB-like carbohydrate kinase family protein | chr5:15065621-15068783 FORWARD LENGTH=309 | SoyBase | E_val: 0 | ISS |
| GO:0008615 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyridoxine biosynthetic process | SoyBase | N/A | ISS |
| GO:0009443 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyridoxal 5'-phosphate salvage | SoyBase | N/A | ISS |
| GO:0010054 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichoblast differentiation | SoyBase | N/A | ISS |
| GO:0042538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0008478 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyridoxal kinase activity | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| KOG2599 | KOG | Pyridoxal/pyridoxine/pyridoxamine kinase | JGI | ISS | |
| PTHR10534 | Panther | PYRIDOXINE KINASE | JGI | ISS | |
| PF08543 | PFAM | Phosphomethylpyrimidine kinase | JGI | ISS | |
| UniRef100_I1MZC9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MZC9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q4JR83 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pyridoxal kinase n=1 Tax=Glycine max RepID=Q4JR83_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma18g04360 not represented in the dataset |
Glyma18g04360 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g33970 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g038600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g04360.1 sequence type=CDS gene model=Glyma18g04360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAAGTGTCATCGTCATCGGAATGAATGTAGACGCAGCAGGAGTTGGCTGGCTCAACGTTGAACACTGTTCCATGCTGTTAAAGCCTCCGCTCTCACTCAACTTCAGATTTTCCCCACAAACGAGCATTTTCCGGGCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCAATCCTCTCGCTCGCTCTTCCCTCGAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGGGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGGATATCCGACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCTAATCGAAGGCCTTGAAGGAAATGATTTATTGTTCTATACTCACTTGCTAACAGGTTATATTGGTTCAGAGTCTTTTCTAAACACTGTATTGCAAGTTGTCAGCAAACTTCGGTCAACAAACCCAGGTCTTTCGTATGTATGTGATCCAGTGATGGGTGATGAAGGAAAGCTTTATGTTCCTCAAGAGCTAGTATCAGTCTATCGTGAGAAGGTTGTTCCAGTAGCTTCAATGTTGACTCCCAACCAGTTTGAAGCAGAACTACTGACAGGCTTTAGGATTCAGTCTGAAGGACATGGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGGTCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTCATCAAAAAGAAAAGGGAGAGCCTCCCAGACAATTTAAGATTGTTATTCCAAAAATACCAGCTTATTTTACGGGAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATAAATACCCAGACAACCTTGAGATTGCTGCGGAACTTGCAGTGTCAAGCTTGCAGGCAGTTTTGCACAGGACACTCAGTGACTACAAAAGTGCTGGACATGATCCTGAGTCAACCAGTTTAGAGATTAGATTAATTCAAAGTCAGGATGATATTTGCACCCCACAGGTAAAACTTAAAGCTGAAATATACAGCTAA
>Glyma18g04360.1 sequence type=predicted peptide gene model=Glyma18g04360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKSVIVIGMNVDAAGVGWLNVEHCSMLLKPPLSLNFRFSPQTSIFRARNSRNSRMAPPILSLALPSNTGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPINSVQFSNHTGYPTFKGQVLNGQQLWDLIEGLEGNDLLFYTHLLTGYIGSESFLNTVLQVVSKLRSTNPGLSYVCDPVMGDEGKLYVPQELVSVYREKVVPVASMLTPNQFEAELLTGFRIQSEGHGREACRLLHAAGPSKVIITSINIDGILLLIGSHQKEKGEPPRQFKIVIPKIPAYFTGTGDLMTALLLGWSNKYPDNLEIAAELAVSSLQAVLHRTLSDYKSAGHDPESTSLEIRLIQSQDDICTPQVKLKAEIYS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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