SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G00380 | AT | Annotation by Michelle Graham. TAIR10: XH/XS domain-containing protein | chr4:167959-170448 FORWARD LENGTH=635 | SoyBase | E_val: 3.00E-52 | ISS |
| GO:0080188 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA-directed DNA methylation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR21596 | Panther | RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED | JGI | ISS | |
| PTHR21596:SF3 | Panther | TRANSCRIPTION FACTOR X1-LIKE | JGI | ISS | |
| PF03469 | PFAM | XH domain | JGI | ISS | |
| UniRef100_F4JH53 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: XH/XS domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4JH53_ARATH | SoyBase | E_val: 1.00E-49 | ISS |
| UniRef100_F6I5P4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=F6I5P4_VITVI | SoyBase | E_val: 3.00E-58 | ISS |
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Glyma18g04295 not represented in the dataset |
Glyma18g04295 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g038200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g04295.2 sequence type=transcript gene model=Glyma18g04295 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATTTTGTTTATTTATAAGCTTGTGTTTTTTCGATTTTGGTTCATGTAAGATTTTAACTTACCTAGATCACCGAAAATATATTTAAGTCATTCAAATTTTAGTTAGTTTTGAGCATTGCTTCACTCATTATTGCTCTCAAAATTTTCATTTTCCACTGTTCATTCTAAACAATCTTGAGCCATCATCTCAGGCTCTTTGAATTTGTGTTGAAATGTGCAAACACAGTTACAAGTGTAAGGAGGCTCTCAGCAAGCAGAGAATGGTTATTGAGAGCCTTCAGAGGGAGATTGAGTTCAAGAATCATAAGTTAATGGAGATGGAGCACAAACATAGTGAGACACTTACATCTGTGCGCAGACTTATTGTAGGGCTTGTGGAGAATATTAATTGCAAAGAAAGAAGTCTGCTTCAAATGGAATGCAAGCATAGTGAATCATTGAACATGGTTCAGAAGTTGATGAATGAGAGAGATAAATTGCAAGAAAGATGTCATCAAGATTTACAATTGACGAAGGTCACAAACGCTAATATGAATCATGACATGGAATGTCTAAAGAAAGACGATGGGCAGATTATCAAGGAACTGGAGGAGAGTAAAGCTCTACATGATCTACAACAGAACTTCATTGAGGAGATTGAAAAGTTGAAAACAGAGTTAGGAGATCAGAGTCATGTAAGAAGTGGTGGGGATTTGAACACTCAAATTTCTACTTTCAGAAATAAATTAAAGGACAAAATGGAATATTTGGACCATGTAGAAACCCTTTATAGTTCTTTAGTAGTTAAAGAGAACCAGTATAGACAAGAACTACATGATGCTCGTGAAGAATCTATAAAGAGTTTGCGAGGTATGTTCAGAGGTCGATCTCAACTTGGAATTAAGAGAATGGGAGAATTAGATCCAAAACCTTTTCAACATTTGTGCTTGCAAAAGTACTCAGATGAACAATGGCAGGAGAAATCTGCTAAGTTATGTTCAGCATGGGAGGAAAATCTGAAGGATCCAACTTGGCACCCTTTCAACAAAATTGAGGTCAATGGCATATTACAGGAAACATTAGATGAAAATGATGAAAAATTGAAAGGGCTGAGAAGTGAATGCGGTGAAGCTGTGTACCAGGCTGTAACAAATGCATTAATGGAAATAGAAGAATACAATTCAAGTGGAAGATATGCAATTGCTGAAATTTGGAACTGGAAGGAGGGAAGAAAAGCCACTTTGAAAGAAATTGTTCAACATATTATTAGGCAATTGAATAGTCACAAGCGCAAAAGAAAGTAGAGCATTTTCATTAGGTCTTTTAAGCATTTTTAAATTTCACTCTCCAATATGTTATTTGTTTTTCTGGTTTAATTTACCAAAACTTATCTTATTATGTTCAAAGGCATGTAATTGATATATCAAAAAACAAAATGGTAATGTAATAATGTAGAAGCAGCTATTAGAGCATAGTGTTTTATTATAAAATTA
>Glyma18g04295.1 sequence type=CDS gene model=Glyma18g04295 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGCAAACACAGTTACAAGTGTAAGGAGGCTCTCAGCAAGCAGAGAATGGTTATTGAGAGCCTTCAGAGGGAGATTGAGTTCAAGAATCATAAGTTAATGGAGATGGAGCACAAACATAGTGAGACACTTACATCTGTGCGCAGACTTATTGTAGGGCTTGTGGAGAATATTAATTGCAAAGAAAGAAGTCTGCTTCAAATGGAATGCAAGCATAGTGAATCATTGAACATGGTTCAGAAGTTGATGAATGAGAGAGATAAATTGCAAGAAAGATGTCATCAAGATTTACAATTGACGAAGGTCACAAACGCTAATATGAATCATGACATGGAATGTCTAAAGAAAGACGATGGGCAGATTATCAAGGAACTGGAGGAGAGTAAAGCTCTACATGATCTACAACAGAACTTCATTGAGGAGATTGAAAAGTTGAAAACAGAGTTAGGAGATCAGAGTCATGTAAGAAGTGGTGGGGATTTGAACACTCAAATTTCTACTTTCAGAAATAAATTAAAGGACAAAATGGAATATTTGGACCATGTAGAAACCCTTTATAGTTCTTTAGTAGTTAAAGAGAACCAGTATAGACAAGAACTACATGATGCTCGTGAAGAATCTATAAAGAGTTTGCGAGGTATGTTCAGAGGTCGATCTCAACTTGGAATTAAGAGAATGGGAGAATTAGATCCAAAACCTTTTCAACATTTGTGCTTGCAAAAGTACTCAGATGAACAATGGCAGGAGAAATCTGCTAAGTTATGTTCAGCATGGGAGGAAAATCTGAAGGATCCAACTTGGCACCCTTTCAACAAAATTGAGGTCAATGGCATATTACAGGAAACATTAGATGAAAATGATGAAAAATTGAAAGGGCTGAGAAGTGAATGCGGTGAAGCTGTGTACCAGGCTGTAACAAATGCATTAATGGAAATAGAAGAATACAATTCAAGTGGAAGATATGCAATTGCTGAAATTTGGAACTGGAAGGAGGGAAGAAAAGCCACTTTGAAAGAAATTGTTCAACATATTATTAGGCAATTGAATAGTCACAAGCGCAAAAGAAAGTAG >Glyma18g04295.2 sequence type=CDS gene model=Glyma18g04295 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGCAAACACAGTTACAAGTGTAAGGAGGCTCTCAGCAAGCAGAGAATGGTTATTGAGAGCCTTCAGAGGGAGATTGAGTTCAAGAATCATAAGTTAATGGAGATGGAGCACAAACATAGTGAGACACTTACATCTGTGCGCAGACTTATTGTAGGGCTTGTGGAGAATATTAATTGCAAAGAAAGAAGTCTGCTTCAAATGGAATGCAAGCATAGTGAATCATTGAACATGGTTCAGAAGTTGATGAATGAGAGAGATAAATTGCAAGAAAGATGTCATCAAGATTTACAATTGACGAAGGTCACAAACGCTAATATGAATCATGACATGGAATGTCTAAAGAAAGACGATGGGCAGATTATCAAGGAACTGGAGGAGAGTAAAGCTCTACATGATCTACAACAGAACTTCATTGAGGAGATTGAAAAGTTGAAAACAGAGTTAGGAGATCAGAGTCATGTAAGAAGTGGTGGGGATTTGAACACTCAAATTTCTACTTTCAGAAATAAATTAAAGGACAAAATGGAATATTTGGACCATGTAGAAACCCTTTATAGTTCTTTAGTAGTTAAAGAGAACCAGTATAGACAAGAACTACATGATGCTCGTGAAGAATCTATAAAGAGTTTGCGAGGTATGTTCAGAGGTCGATCTCAACTTGGAATTAAGAGAATGGGAGAATTAGATCCAAAACCTTTTCAACATTTGTGCTTGCAAAAGTACTCAGATGAACAATGGCAGGAGAAATCTGCTAAGTTATGTTCAGCATGGGAGGAAAATCTGAAGGATCCAACTTGGCACCCTTTCAACAAAATTGAGGTCAATGGCATATTACAGGAAACATTAGATGAAAATGATGAAAAATTGAAAGGGCTGAGAAGTGAATGCGGTGAAGCTGTGTACCAGGCTGTAACAAATGCATTAATGGAAATAGAAGAATACAATTCAAGTGGAAGATATGCAATTGCTGAAATTTGGAACTGGAAGGAGGGAAGAAAAGCCACTTTGAAAGAAATTGTTCAACATATTATTAGGCAATTGAATAGTCACAAGCGCAAAAGAAAGTAG
>Glyma18g04295.1 sequence type=predicted peptide gene model=Glyma18g04295 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MCKHSYKCKEALSKQRMVIESLQREIEFKNHKLMEMEHKHSETLTSVRRLIVGLVENINCKERSLLQMECKHSESLNMVQKLMNERDKLQERCHQDLQLTKVTNANMNHDMECLKKDDGQIIKELEESKALHDLQQNFIEEIEKLKTELGDQSHVRSGGDLNTQISTFRNKLKDKMEYLDHVETLYSSLVVKENQYRQELHDAREESIKSLRGMFRGRSQLGIKRMGELDPKPFQHLCLQKYSDEQWQEKSAKLCSAWEENLKDPTWHPFNKIEVNGILQETLDENDEKLKGLRSECGEAVYQAVTNALMEIEEYNSSGRYAIAEIWNWKEGRKATLKEIVQHIIRQLNSHKRKRK* >Glyma18g04295.2 sequence type=predicted peptide gene model=Glyma18g04295 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MCKHSYKCKEALSKQRMVIESLQREIEFKNHKLMEMEHKHSETLTSVRRLIVGLVENINCKERSLLQMECKHSESLNMVQKLMNERDKLQERCHQDLQLTKVTNANMNHDMECLKKDDGQIIKELEESKALHDLQQNFIEEIEKLKTELGDQSHVRSGGDLNTQISTFRNKLKDKMEYLDHVETLYSSLVVKENQYRQELHDAREESIKSLRGMFRGRSQLGIKRMGELDPKPFQHLCLQKYSDEQWQEKSAKLCSAWEENLKDPTWHPFNKIEVNGILQETLDENDEKLKGLRSECGEAVYQAVTNALMEIEEYNSSGRYAIAEIWNWKEGRKATLKEIVQHIIRQLNSHKRKRK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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