SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G21380 | AT | Annotation by Michelle Graham. TAIR10: receptor kinase 3 | chr4:11389219-11393090 REVERSE LENGTH=850 | SoyBase | E_val: 2.00E-146 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0048544 | GO-bp | Annotation by Michelle Graham. GO Biological Process: recognition of pollen | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0004675 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transmembrane receptor protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| GO:0030246 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding | SoyBase | N/A | ISS |
| GO:0031625 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin protein ligase binding | SoyBase | N/A | ISS |
| KOG1187 | KOG | Serine/threonine protein kinase | JGI | ISS | |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24420:SF430 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| PF01453 | PFAM | D-mannose binding lectin | JGI | ISS | |
| PF08276 | PFAM | PAN-like domain | JGI | ISS | |
| PF11883 | PFAM | Domain of unknown function (DUF3403) | JGI | ISS | |
| UniRef100_B9RQP5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine-protein kinase PBS1, putative n=1 Tax=Ricinus communis RepID=B9RQP5_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E59D | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E59D related cluster n=1 Tax=unknown RepID=UPI000233E59D | SoyBase | E_val: 0 | ISS |
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Glyma18g04220 not represented in the dataset |
Glyma18g04220 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g34090 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g037600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g04220.2 sequence type=CDS gene model=Glyma18g04220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTTCGGCAACAGAATACTATACTTCATTACTTTCACTTGTCTCCTGCACTCAACAAAGCCTTCAAACTTTAACGGTGACACGCTATTCCAAGGTCATGATCAGCTCACAACAACCAACTCTTTGATCTGCTCTTCAGGTTTGTTCACACTGAGTTTCTTTCAGCTCGATGAGTCTGAATATTTCTACCTTGGAATTAGACTCTCAGTTGTTAATTCTAGTTATAACTGGGTTGCCAATAGAGACGAGCCAATCCGTGACCCTTCAGTGGCTCTCACAATTGATCAATATGGTAACTTGAAAATTATTTCCAACGGTGGAAATTCCACTATCATGCTCTATTCTTCTTCTAAACCTGAAAGTAATAGCAACAGTACTATCATCACCAGTGCCATCTTGCAAGATAATGGCAACTTTGTGCTTCAGGAAATAAACCAAGATGGATCTGTGAAGAACATATTGTGGCAAAGCTTTGATTATCCCACAAACATGCTTTTACCAGGGATGAAGCTAGGGTTTGACAGAAAAACAGGCCAAAATTGGTCTATAACATCATGGAGAAGTGGTAAGTCTCCTTTGTCAGGGTCCTTCAGCCTTGGCCTTGACCACAAAACGAAGGAAATGGTGATGTGGTGGAGAGAGAAGATTGTTTGGAGTAGTGGCCAATGGAGCAATGGAAATTTTGCCAATTTAAAGTCCTCACTTTACGAGAAGGACTTCGTTTTTGAGTACTACTCAGATGAAGATGAAACGTACGTGAAGTATGTGCCTGTTTATGGTTATATCATAATGGGATCTTTGGGTATAATATATGGTAGCAGTGGTGCCAGTTATTCATGCAGTGATAACAAGTACTTTCTGTCTGGTTGTTCAATGCCAAGTGCACACAAATGCACGGACGTTGATAGTTTGTACTTAGGCAGTAGCGAGAGTAGATATGGGGTAATGGCAGGGAAAGGGTTCATATTTGATGCAAAGGAGAAACTAAGCCATTTTGATTGCTGGATGAAGTGCTTGAATAATTGCTCTTGCGAGGCTTACTCTTATGTTAATGCGGATGCAACTGGTTGTGAGATATGGAGCAAGGGCACAGCAAACTTTTCTGACACTAACAATTTGATCACTGGTAGCCGCCAAATTTACTTCATTCGGAGTGGAAAAGCTGAAAAGCGTAAGAAGCAAAAAGAACTACTAACTGATATTGGAAGAAGCACTGCCATTTCCATTGCATACGGTGAAAGAAAAGAACAGAGGAAAGATGGAAACACAAGTGATGAAACATATATATTTGACTTTCAAACTATTCTTGAGGCAACTGCTAATTTTTCTTCCACCCATAAAATAGGGGAGGGAGGCTTTGGACCTGTCTACAAGGGGAAGCTGTCAAATGGGCAAGAAATTGCTATAAAGAGACTATCCAAAAGTTCAGGACAGGGGCTGATAGAGTTCAAAAATGAAGCAATGCTAATCGTCAAACTTCAGCACACTAGTCTAGTGAGGCTTCTTGGTTTTTGTATAGACAGAGAAGAAAGAATATTAGTCTACGAGTATATGCCCAACAAAAGCTTGAATTTATATCTCTTTGATTCCAACAAGAGAAACATGTTAGAATGGAAGATACGATGTCAAATTATTGAAGGAGTTGCTCAAGGACTCGTATATTTACATCAATATTCAAGATTAAAAGTGATACACAGAGACTTGAAAGCTAGCAACATTTTATTGGACAATGAGTTGAATCCAAAAATATCAGATTTTGGAACAGCTAGAATATTTGAACTAGCAGAATCAGAAGAACAAACAAACAGAATTGTCGGGACATATGGCTATATGTCTCCAGAATATGCAATGAGGGGTGTTATCTCGACTAAAATAGATGTGTATAGTTTTGGAGTCTTGCTACTAGAGATAGTAAGTGGAAAGAAAAATAGTGATGATTACCCACTCAATCTTGTTGTTTATGCATGGAAATTATGGAACGAAGGTGAAGCTCTAAATCTAACGGACACATTGTTGGATGGGTCATGCCCTCCCATCCAAGTGTTACGCTACATTCATATTGGTCTTTTATGCACTCAAGATCAAGCAAAAGAGAGGCCAACTATGGTCCAAGTTGTTTCTTTTCTATCAAATGAAATTGCTGAATTGCCTCTACCTAAGCAACCAGGATTTTGTAGCAGTGAATCCATGGAAGAGATAGAGCAGCCTAAAAGTTGTTCAAATGAGATAACAATGTCATTGACATCAGGTAGATAA
>Glyma18g04220.2 sequence type=predicted peptide gene model=Glyma18g04220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAFGNRILYFITFTCLLHSTKPSNFNGDTLFQGHDQLTTTNSLICSSGLFTLSFFQLDESEYFYLGIRLSVVNSSYNWVANRDEPIRDPSVALTIDQYGNLKIISNGGNSTIMLYSSSKPESNSNSTIITSAILQDNGNFVLQEINQDGSVKNILWQSFDYPTNMLLPGMKLGFDRKTGQNWSITSWRSGKSPLSGSFSLGLDHKTKEMVMWWREKIVWSSGQWSNGNFANLKSSLYEKDFVFEYYSDEDETYVKYVPVYGYIIMGSLGIIYGSSGASYSCSDNKYFLSGCSMPSAHKCTDVDSLYLGSSESRYGVMAGKGFIFDAKEKLSHFDCWMKCLNNCSCEAYSYVNADATGCEIWSKGTANFSDTNNLITGSRQIYFIRSGKAEKRKKQKELLTDIGRSTAISIAYGERKEQRKDGNTSDETYIFDFQTILEATANFSSTHKIGEGGFGPVYKGKLSNGQEIAIKRLSKSSGQGLIEFKNEAMLIVKLQHTSLVRLLGFCIDREERILVYEYMPNKSLNLYLFDSNKRNMLEWKIRCQIIEGVAQGLVYLHQYSRLKVIHRDLKASNILLDNELNPKISDFGTARIFELAESEEQTNRIVGTYGYMSPEYAMRGVISTKIDVYSFGVLLLEIVSGKKNSDDYPLNLVVYAWKLWNEGEALNLTDTLLDGSCPPIQVLRYIHIGLLCTQDQAKERPTMVQVVSFLSNEIAELPLPKQPGFCSSESMEEIEQPKSCSNEITMSLTSGR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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