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Report for Sequence Feature Glyma18g04081

Feature Type:gene_model
Chromosome:Gm18
Start:2844664
stop:2849361
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g04081
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G39730AT Annotation by Michelle Graham. TAIR10: rubisco activase | chr2:16571174-16573345 REVERSE LENGTH=441 SoyBaseE_val: 0ISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009416GO-bp Annotation by Michelle Graham. GO Biological Process: response to light stimulus SoyBaseN/AISS
GO:0009595GO-bp Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus SoyBaseN/AISS
GO:0009637GO-bp Annotation by Michelle Graham. GO Biological Process: response to blue light SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009814GO-bp Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0010114GO-bp Annotation by Michelle Graham. GO Biological Process: response to red light SoyBaseN/AISS
GO:0010150GO-bp Annotation by Michelle Graham. GO Biological Process: leaf senescence SoyBaseN/AISS
GO:0010155GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of proton transport SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010218GO-bp Annotation by Michelle Graham. GO Biological Process: response to far red light SoyBaseN/AISS
GO:0010310GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0019684GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0043900GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0010287GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule SoyBaseN/AISS
GO:0010319GO-cc Annotation by Michelle Graham. GO Cellular Compartment: stromule SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0030234GO-mf Annotation by Michelle Graham. GO Molecular Function: enzyme regulator activity SoyBaseN/AISS
GO:0043531GO-mf Annotation by Michelle Graham. GO Molecular Function: ADP binding SoyBaseN/AISS
GO:0046863GO-mf Annotation by Michelle Graham. GO Molecular Function: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity SoyBaseN/AISS
KOG0651 KOG 26S proteasome regulatory complex, ATPase RPT4 JGI ISS
PTHR11603Panther AAA FAMILY ATPASE JGI ISS
PTHR11603:SF153Panther JGI ISS
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI ISS
UniRef100_C6T859UniRef Annotation by Michelle Graham. Best UniRef hit: Beta-form rubisco activase n=1 Tax=Glycine max RepID=C6T859_SOYBN SoyBaseE_val: 0ISS
UniRef100_C6T859UniRef Annotation by Michelle Graham. Most informative UniRef hit: Beta-form rubisco activase n=1 Tax=Glycine max RepID=C6T859_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g04081
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g04081 not represented in the dataset
Glyma18g04081 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g04081
ParalogEvidenceComments
Glyma11g34230 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g04081 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g036400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g04081
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g04081
>Glyma18g04081.2   sequence type=transcript   gene model=Glyma18g04081   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGGGTCAATTAGCACCATCTTTACGTAACAACTACTATAAGTCACAGCCTCTGGTCACAAGCCACTTAGCATTGAATTTGCAATTGAAGTTAAAAGCCTTAGCCTTCCCTACAACTCCAAACACAAAGACATCATCATCCATGGCTGCCTCCGTCTCCACTGTCGGAGCTGTCAACAGAGCTCTTTTGAACCTGAATGGTTCTGGAGCTGGAGCTTCAGCTCCCAGTTCAGCCTTCTTTGGGACCAGCTTGAAGAAGGTTATTGCCTCAAGGGTCCCCAACAGCAAGGTTTCCGGTGGAAGCTTCAAGATTGTTGCTGTAGAAGAGAAGAAAGAGATTGAAGAGACCCAGCAGACCGACAAGGACAGATGGAAGGGTCTTGCCTATGATATCTCAGACGACCAACAAGACATCACAAGAGGAAAGGGTTTGGTTGACTCCCTTTTCCAAGCTCCACAGGATGCTGGAACTCACTATGCAGTCATGAGCTCCTACGAGTACCTCAGCACTGGACTTCGCCAGTACTTGGACAACAAAATGGATGGATTCTACATTGCTCCAGCTTTTATGGACAAGCTTGTTGTTCACATCTCCAAGAACTTCATGACCCTGCCCAACATCAAGGTTCCTCTCATTCTTGGTATCTGGGGAGGCAAGGGACAAGGAAAATCTTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAACCCCATCATGATGAGTGCTGGAGAGTTGGAAAGTGGAAATGCAGGAGAGCCAGCAAAACTGATCAGGCAGAGATACCGTGAAGCTGCAGACATGATCAAGAAGGGAAAGATGTGCGCTCTCTTCATCAACGATCTTGATGCAGGAGCTGGTCGTCTTGGTGGAACCACACAATACACTGTGAACAACCAGATGGTGAATGCCACTCTCATGAACATTGCTGATAACCCCACCAATGTGCAGCTTCCAGGTATGTACAACAAGGAAGAGAACCCCCGTGTTCCCATCATTGTCACCGGTAACGATTTCTCAACACTCTATGCACCTCTCATCCGTGATGGGCGTATGGAGAAGTTCTACTGGGCACCAACAAGGGAAGACCGCATTGGTGTTTGCACCGGAATTTTCCGCACTGATGGTATTCCTGAACAGGACATTGTCAAGCTTGTTGACACCTTCCCTGGCCAATCCATTGATTTCTTTGGTGCACTGAGGGCCAGAGTATATGATGATGAAGTGAGGAAGTGGATTTCTGGTGTTGGTGTTGACAGTGTTGGGAAGAAGCTTGTGAACTCAAAAGATGGACCTCCAACCTTTGAGCAGCCCAAGATGACTCTGGAGAAGCTCTTGCTGTATGGTAACATGCTTGTCCAAGAACAAGAGAATGTCAAGAGAGTCCAATTGGCTGACAAGTACTTGAACGAGGCTGCTCTTGGAAATGCTAACGAGGATGCTATTCAGAGGGGAACTTTCTTCCAGTCTTGAATTGGAGGCAAAGCAAACTTGGCAAGTAAATATTTCTGTTCGTGAAGGTTGTTGTACTAATCCAAGTGCTAGAAGTTGTGATGGAACTTGCGTGTAACATTCTTAGCATTCTCAATGTCTTAGGTGCAAAGAGAAGATGCTAAGTTTGAGATGATCTTACTATATTTTTCATATTGGACCGTCTTCCTCTATAATTTTGAGTTACAGTGTCCACTTAAATTGAATTTGGTGCCTTTTCCTTTTGTCCTATATTCTTGATTTATTTTTTTAAAATTTATTTCTTTTGTTTGACGTACAAATATTAGTACATATCTAGCCCTTATAGCTTCATTTTCAAGTGCTAAGGATCTGAAGAACTTGGAGAGAAAGGTCAAGTTCAGAGCTCAATAATGAATGGCAAGCGGCCACCAAATCATAAACATTACAAATTGTTCCTTATATACAGTAACTACTTTAGGCCCAAAAAGAAATGAGCACCCAAACCACTTATCAAATAACTCCCATCAGATGTTGCACTGATAACACTCTTTTAACGTGATCTTTCATTTTTCATATGTTACACTGTAATGTTCTTTTAGCATATGTACCCTTATGTAAGTGTCGATGGACATT
Coding sequences of Glyma18g04081
>Glyma18g04081.1   sequence type=CDS   gene model=Glyma18g04081   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGGGTCAATTAGCACCATCTTTACGTAACAACTACTATAAGTCACAGCCTCTGGTCACAAGCCACTTAGCATTGAATTTGCAATTGAAGTTAAAAGCCTTAGCCTTCCCTACAACTCCAAACACAAAGACATCATCATCCATGGCTGCCTCCGTCTCCACTGTCGGAGCTGTCAACAGAGCTCTTTTGAACCTGAATGGTTCTGGAGCTGGAGCTTCAGCTCCCAGTTCAGCCTTCTTTGGGACCAGCTTGAAGAAGGTTATTGCCTCAAGGGTCCCCAACAGCAAGGTTTCCGGTGGAAGCTTCAAGATTGTTGCTGTAGAAGAGAAGAAAGAGATTGAAGAGACCCAGCAGACCGACAAGGACAGATGGAAGGGTCTTGCCTATGATATCTCAGACGACCAACAAGACATCACAAGAGGAAAGGGTTTGGTTGACTCCCTTTTCCAAGCTCCACAGGATGCTGGAACTCACTATGCAGTCATGAGCTCCTACGAGTACCTCAGCACTGGACTTCGCCAGTACTTGGACAACAAAATGGATGGATTCTACATTGCTCCAGCTTTTATGGACAAGCTTGTTGTTCACATCTCCAAGAACTTCATGACCCTGCCCAACATCAAGGTTCCTCTCATTCTTGGTATCTGGGGAGGCAAGGGACAAGGAAAATCTTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAACCCCATCATGATGAGTGCTGGAGAGTTGGAAAGTGGAAATGCAGGAGAGCCAGCAAAACTGATCAGGCAGAGATACCGTGAAGCTGCAGACATGATCAAGAAGGGAAAGATGTGCGCTCTCTTCATCAACGATCTTGATGCAGGAGCTGGTCGTCTTGGTGGAACCACACAATACACTGTGAACAACCAGATGGTGAATGCCACTCTCATGAACATTGCTGATAACCCCACCAATGTGCAGCTTCCAGGTATGTACAACAAGGAAGAGAACCCCCGTGTTCCCATCATTGTCACCGGTAACGATTTCTCAACACTCTATGCACCTCTCATCCGTGATGGGCGTATGGAGAAGTTCTACTGGGCACCAACAAGGGAAGACCGCATTGGTGTTTGCACCGGAATTTTCCGCACTGATGGTATTCCTGAACAGGACATTGTCAAGCTTGTTGACACCTTCCCTGGCCAATCCATTGATTTCTTTGGTGCACTGAGGGCCAGAGTATATGATGATGAAGTGAGGAAGTGGATTTCTGGTGTTGGTGTTGACAGTGTTGGGAAGAAGCTTGTGAACTCAAAAGATGGACCTCCAACCTTTGAGCAGCCCAAGATGACTCTGGAGAAGCTCTTGCTGTATGGTAACATGCTTGTCCAAGAACAAGAGAATGTCAAGAGAGTCCAATTGGCTGACAAGTACTTGAACGAGGCTGCTCTTGGAAATGCTAACGAGGATGCTATTCAGAGGGGAACTTTCTTCCAGTCTTGA

>Glyma18g04081.2   sequence type=CDS   gene model=Glyma18g04081   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGGGTCAATTAGCACCATCTTTACGTAACAACTACTATAAGTCACAGCCTCTGGTCACAAGCCACTTAGCATTGAATTTGCAATTGAAGTTAAAAGCCTTAGCCTTCCCTACAACTCCAAACACAAAGACATCATCATCCATGGCTGCCTCCGTCTCCACTGTCGGAGCTGTCAACAGAGCTCTTTTGAACCTGAATGGTTCTGGAGCTGGAGCTTCAGCTCCCAGTTCAGCCTTCTTTGGGACCAGCTTGAAGAAGGTTATTGCCTCAAGGGTCCCCAACAGCAAGGTTTCCGGTGGAAGCTTCAAGATTGTTGCTGTAGAAGAGAAGAAAGAGATTGAAGAGACCCAGCAGACCGACAAGGACAGATGGAAGGGTCTTGCCTATGATATCTCAGACGACCAACAAGACATCACAAGAGGAAAGGGTTTGGTTGACTCCCTTTTCCAAGCTCCACAGGATGCTGGAACTCACTATGCAGTCATGAGCTCCTACGAGTACCTCAGCACTGGACTTCGCCAGTACTTGGACAACAAAATGGATGGATTCTACATTGCTCCAGCTTTTATGGACAAGCTTGTTGTTCACATCTCCAAGAACTTCATGACCCTGCCCAACATCAAGGTTCCTCTCATTCTTGGTATCTGGGGAGGCAAGGGACAAGGAAAATCTTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAACCCCATCATGATGAGTGCTGGAGAGTTGGAAAGTGGAAATGCAGGAGAGCCAGCAAAACTGATCAGGCAGAGATACCGTGAAGCTGCAGACATGATCAAGAAGGGAAAGATGTGCGCTCTCTTCATCAACGATCTTGATGCAGGAGCTGGTCGTCTTGGTGGAACCACACAATACACTGTGAACAACCAGATGGTGAATGCCACTCTCATGAACATTGCTGATAACCCCACCAATGTGCAGCTTCCAGGTATGTACAACAAGGAAGAGAACCCCCGTGTTCCCATCATTGTCACCGGTAACGATTTCTCAACACTCTATGCACCTCTCATCCGTGATGGGCGTATGGAGAAGTTCTACTGGGCACCAACAAGGGAAGACCGCATTGGTGTTTGCACCGGAATTTTCCGCACTGATGGTATTCCTGAACAGGACATTGTCAAGCTTGTTGACACCTTCCCTGGCCAATCCATTGATTTCTTTGGTGCACTGAGGGCCAGAGTATATGATGATGAAGTGAGGAAGTGGATTTCTGGTGTTGGTGTTGACAGTGTTGGGAAGAAGCTTGTGAACTCAAAAGATGGACCTCCAACCTTTGAGCAGCCCAAGATGACTCTGGAGAAGCTCTTGCTGTATGGTAACATGCTTGTCCAAGAACAAGAGAATGTCAAGAGAGTCCAATTGGCTGACAAGTACTTGAACGAGGCTGCTCTTGGAAATGCTAACGAGGATGCTATTCAGAGGGGAACTTTCTTCCAGTCTTGA
Predicted protein sequences of Glyma18g04081
>Glyma18g04081.1   sequence type=predicted peptide   gene model=Glyma18g04081   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWGQLAPSLRNNYYKSQPLVTSHLALNLQLKLKALAFPTTPNTKTSSSMAASVSTVGAVNRALLNLNGSGAGASAPSSAFFGTSLKKVIASRVPNSKVSGGSFKIVAVEEKKEIEETQQTDKDRWKGLAYDISDDQQDITRGKGLVDSLFQAPQDAGTHYAVMSSYEYLSTGLRQYLDNKMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDGIPEQDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKDGPPTFEQPKMTLEKLLLYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIQRGTFFQS*

>Glyma18g04081.2   sequence type=predicted peptide   gene model=Glyma18g04081   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWGQLAPSLRNNYYKSQPLVTSHLALNLQLKLKALAFPTTPNTKTSSSMAASVSTVGAVNRALLNLNGSGAGASAPSSAFFGTSLKKVIASRVPNSKVSGGSFKIVAVEEKKEIEETQQTDKDRWKGLAYDISDDQQDITRGKGLVDSLFQAPQDAGTHYAVMSSYEYLSTGLRQYLDNKMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDGIPEQDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKDGPPTFEQPKMTLEKLLLYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIQRGTFFQS*






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