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Report for Sequence Feature Glyma18g03970

Feature Type:gene_model
Chromosome:Gm18
Start:2744616
stop:2747751
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g03970
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G44920AT Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:18524419-18526502 FORWARD LENGTH=224 SoyBaseE_val: 7.00E-102ISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0006636GO-bp Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0015979GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis SoyBaseN/AISS
GO:0015995GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process SoyBaseN/AISS
GO:0016117GO-bp Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0043085GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009543GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0031977GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid lumen SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR14136Panther FAMILY NOT NAMED JGI ISS
PF00805PFAM Pentapeptide repeats (8 copies) JGI ISS
UniRef100_C6SWP1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWP1_SOYBN SoyBaseE_val: 7.00E-156ISS
UniRef100_O22160UniRef Annotation by Michelle Graham. Most informative UniRef hit: Thylakoid lumenal 15 kDa protein 1, chloroplastic n=1 Tax=Arabidopsis thaliana RepID=TL15A_ARATH SoyBaseE_val: 3.00E-99ISS

Expression Patterns of Glyma18g03970
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g03970 not represented in the dataset
Glyma18g03970 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g03970
ParalogEvidenceComments
Glyma11g34350 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g03970 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g035300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g03970
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g03970
>Glyma18g03970.2   sequence type=transcript   gene model=Glyma18g03970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGATCCTGAGACCGAGCAACATTATCCACATCCACATGGTACCTATGACACTTTGCCGTCGTGAGTTGCATCTGCGTGTGACTGCAAGAAATGGCTCTTGTTCTCAACGTCTCATTGTGTTCCATTTCTAAACCCCATCTTTCTCTCTCAACCTCCAATCCCAACAAAGCTTCTTCAACTCTTCCTCTTCCTATTCTGGGACTTAAAACAAAGCAAAGTCTCCAACCATCTCAGAAACTCACATTTTCATTGGGTGAATCAGTGGCTGGTGCCACCCTCGTTGCTCTCCTCTCTGCTTCTTTCATCTTTGTTGATCCCGCACTTGCATTCAAGGGTGGAGGGCCATACGGGCAGGAAGTGACAAGGGGACAAGATCTCACTGGGAAGGACTTTAGTGGCAAGACTCTGATCAAACAAGACTTCAAAACGTCCATACTGAGACAAGCCAATTTTAAAGGTGCAAAGTTAATAGGTGCTAGCTTCTTTGATGCTGATTTAACAGGTGCTGACCTTTCGGATGCTGATCTTAGAAATGCAGATTTTTCCCTGGCAAATGTGACAAAGGCAAATTTAAGCAATGCTAACTTGGAAGGTGCACTTGCAACAGGAAACACTTCTTTTAGGGGATCAAATGTTACAGGCGCTGGTATTAGTAATATCACTTAAACTATAATGTGCTACTATTGGGCTTTTAAGCGAAATATGGTTGTAAAAGAGTGTATGTATCTGATAATAGCTTTCAACTAATTAAAGGACATAACATTGGTATTGGCTGGTGATTAATTAACTAATCTATAGGTCCACAATTAAAGG
Coding sequences of Glyma18g03970
>Glyma18g03970.1   sequence type=CDS   gene model=Glyma18g03970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTTGTTCTCAACGTCTCATTGTGTTCCATTTCTAAACCCCATCTTTCTCTCTCAACCTCCAATCCCAACAAAGCTTCTTCAACTCTTCCTCTTCCTATTCTGGGACTTAAAACAAAGCAAAGTCTCCAACCATCTCAGAAACTCACATTTTCATTGGGTGAATCAGTGGCTGGTGCCACCCTCGTTGCTCTCCTCTCTGCTTCTTTCATCTTTGTTGATCCCGCACTTGCATTCAAGGGTGGAGGGCCATACGGGCAGGAAGTGACAAGGGGACAAGATCTCACTGGGAAGGACTTTAGTGGCAAGACTCTGATCAAACAAGACTTCAAAACGTCCATACTGAGACAAGCCAATTTTAAAGGTGCAAAGTTAATAGGTGCTAGCTTCTTTGATGCTGATTTAACAGGTGCTGACCTTTCGGATGCTGATCTTAGAAATGCAGATTTTTCCCTGGCAAATGTGACAAAGGCAAATTTAAGCAATGCTAACTTGGAAGGTGCACTTGCAACAGGAAACACTTCTTTTAGGGGATCAAATGTTACAGGCGCTGACTTCACGGATGTACCACTAAGAGAAGATCAACGTGAATACCTCTGCAAAGTTGCTGATGGAGTGAACCCAACAACTGGAAATGCTACACGTGATACATTGTTCTGTAATTAG

>Glyma18g03970.2   sequence type=CDS   gene model=Glyma18g03970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTTGTTCTCAACGTCTCATTGTGTTCCATTTCTAAACCCCATCTTTCTCTCTCAACCTCCAATCCCAACAAAGCTTCTTCAACTCTTCCTCTTCCTATTCTGGGACTTAAAACAAAGCAAAGTCTCCAACCATCTCAGAAACTCACATTTTCATTGGGTGAATCAGTGGCTGGTGCCACCCTCGTTGCTCTCCTCTCTGCTTCTTTCATCTTTGTTGATCCCGCACTTGCATTCAAGGGTGGAGGGCCATACGGGCAGGAAGTGACAAGGGGACAAGATCTCACTGGGAAGGACTTTAGTGGCAAGACTCTGATCAAACAAGACTTCAAAACGTCCATACTGAGACAAGCCAATTTTAAAGGTGCAAAGTTAATAGGTGCTAGCTTCTTTGATGCTGATTTAACAGGTGCTGACCTTTCGGATGCTGATCTTAGAAATGCAGATTTTTCCCTGGCAAATGTGACAAAGGCAAATTTAAGCAATGCTAACTTGGAAGGTGCACTTGCAACAGGAAACACTTCTTTTAGGGGATCAAATGTTACAGGCGCTGGTATTAGTAATATCACTTAA
Predicted protein sequences of Glyma18g03970
>Glyma18g03970.1   sequence type=predicted peptide   gene model=Glyma18g03970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALVLNVSLCSISKPHLSLSTSNPNKASSTLPLPILGLKTKQSLQPSQKLTFSLGESVAGATLVALLSASFIFVDPALAFKGGGPYGQEVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGAKLIGASFFDADLTGADLSDADLRNADFSLANVTKANLSNANLEGALATGNTSFRGSNVTGADFTDVPLREDQREYLCKVADGVNPTTGNATRDTLFCN*

>Glyma18g03970.2   sequence type=predicted peptide   gene model=Glyma18g03970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALVLNVSLCSISKPHLSLSTSNPNKASSTLPLPILGLKTKQSLQPSQKLTFSLGESVAGATLVALLSASFIFVDPALAFKGGGPYGQEVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGAKLIGASFFDADLTGADLSDADLRNADFSLANVTKANLSNANLEGALATGNTSFRGSNVTGAGISNIT*






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