Glyma18g03913 - SoyBase

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Report for Sequence Feature Glyma18g03913

Feature Type:	gene_model
Chromosome:	Gm18
Start:	2699636
stop:	2707766
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g03913

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G39740	AT	Annotation by Michelle Graham. TAIR10: Nucleotidyltransferase family protein \| chr2:16576250-16578704 FORWARD LENGTH=511	SoyBase	E_val: 4.00E-139	ISS
GO:0071076	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA 3' uridylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016779	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity	SoyBase	N/A	ISS
PTHR12271	Panther	POLY(A) POLYMERASE CID (PAP)-RELATED	JGI		ISS
PTHR12271:SF13	Panther	ZINC FINGER, CCHC DOMAIN CONTAINING 11	JGI		ISS
PF01909	PFAM	Nucleotidyltransferase domain	JGI		ISS
UniRef100_B9SDZ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SDZ7_RICCO	SoyBase	E_val: 4.00E-164	ISS
UniRef100_I1LMI9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LMI9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g03913

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g03913 not represented in the dataset	Glyma18g03913 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g03913

Paralog	Evidence	Comments
Glyma11g34420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g03913 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g034900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g03913

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g03913

Limit To All Plant Sequences

>Glyma18g03913.2   sequence type=transcript   gene model=Glyma18g03913   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAACACCAAACACGACAAAGGAAAAACCCCTCTTCGTAAGTTAGCTCACTGGCACTGCTGCTTCAACTCACTCCCAAGTTTCCTCCTTTCTCACATATAAGCAATGCCAACGTAAGTTTCAGCAATCAGCCTTCATTTATTTCCCCCTCAAATCCGAATGGTTTCTCTTGATGGTCAGGGATATTGCACCAAGGCTTTCAATATGCTCTTAGATTGTGAACCTCTTGCCTTCATCTTTTCCATTTAGTATTGCAAAACATTATTGCAGCTGTCTCATTGATACATTGACTGCTACTCAGAGTTATTGAGGGGCAAAAATGAGTACACATAGTACGTTGGATATTGTTGTAAATGATATACTTCGAGTGGTCACACCAGTACAAGAAGATTGGGAGATACGATTTGCAATTATTAATGATTTACGAAGTATTGTTGAATCTGTAGAAAGCCTGAGAGGAGCAACTGTTGAGCCATTTGGATCATTTGTATCTAATCTCTTCACGCGATGGGGTGACTTGGATATTTCAATTGAGCTATCAAATGGTTTGCATATTTCATCTGCTGGGAAAAAACAAAAACAAACTTTCTTGGGGGATGTTTTAAAAGCTTTGAGAATGAAAGGTGGAGGGAGCAACTTGCAGTTCATCTCCAATGCACGAGTGCCCATTTTAAAATTTAAAAGCTACCGGCAGGGTGTATCTTGTGACATTTCAATTAATAACCTGCCTGGTCAAATGAAATCCAAGATTTTGCTTTGGATCAACAAGATAGATGGCCGTTTTCGTCATATGGTTTTACTGGTCAAGGAATGGGCCAAAGCACATAAAATCAATAACTCGAAAGCTGGAACTTTCAACTCCTATTCACTAAGTTTGCTTGTGATATTTTATTTTCAGACATGTATTCCTGCAATTTTTCCACCGCTTAAAGATATATACCCTGGCAACATGGTTGATGATCTTATAGGCGTTAGATCTGATGCAGAGAATCTTATTGCACAAACATGTGATGCTAACATAAACCGGTTCATATCAAACAGGGCAAGGTCAATTAACAGAAAATCTGTGGCTGAGCTTTTTGTTGAATTCATAGGAAAGTTTGCTAAGATGGATTCAATGGCCGTGAAGATGGGAATTTGCCCCTATTCTGGAAAATGGGAACAAATAGAGGACAATATGATTTGGTTACCCAAGACTTATGCAATATTTGTTGAGGATCCTTTTGAGCAGCCACAAAATACTGCAAGATCCGTTAGCGCAGGACAACTGAAGAAGATAACTGAGGCATTTGCAAGGACGCATGACTTGCTTACCTCAACAAATCAGAATCAAATTTCACTTTTGTCCAACATGGCACCTGCGCATGTTATAAGATGTATCACAAGGCCTTATGGTGGAGGTTACTTTCACCCAACTCAGCCACAAGTGCAGAGGGCCATACGCCCACAACTGCAGTCGCAACGTCATTTTCAAAATGTCAGTCAAGGAACAAGCTCCAACAGTTCATCTTCAAAAGGACATACATTGGTGCATAGAGGCCAACAGATATGGAGGCCAAAGAGTTAAAAGGGGATCTCTATTACTCCGAAAATGCCATGGTTTTAGCTTTGAACAGGTTTTTACTATTGCCTTTCAGTTTACTTGTTAACACAAGTGATTGAAAGAATGGGATTTTGATTTTTTTTGTGCCCTTGTGGATCAAAAAGTGATCAACCGTGTATATTACATGAGGTTTTGGTGGGGCATTATATTGACGTTTTTACAACTCTTATGTACTTGTGGTAATATTCGGAGCATGCAAGAGTTTAAAATGTGCAACTTTGCATATGAACCACAAATTGTTTTGCTCGTTTACCAAGTCGCATTATAGTAGTATTGGTAACCGACAAAGATTTAATAAGGGTAATAGAGACTTATAAATGTTGTAACACACTTTTGACAGACTTTTCATTCATTTTTTATTAGGTGAAATAATGGGAGCTTCACTTAATCTGGGCACACTGAGACCTACGTGTAAGTGATTTAGTTATGG

>Glyma18g03913.3   sequence type=transcript   gene model=Glyma18g03913   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCACCTCATAAAAGTTCATTATCTTAAAAAGGTTTTCCATATTTCAAAGTAGAAAACCCCTCTTCGTAAGTTAGCTCACTGGCACTGCTGCTTCAACTCACTCCCAAGTTTCCTCCTTTCTCACATATAAGCAATGCCAACGTAAGTTTCAGCAATCAGCCTTCATTTATTTCCCCCTCAAATCCGAATGGTTTCTCTTGATGGTCAGGGATATTGCACCAAGGCTTTCAATATGCTCTTAGATTGTGAACCTCTTGCCTTCATCTTTTCCATTTAGTATTGCAAAACATTATTGCAGCTGTCTCATTGATACATTGACTGCTACTCAGAGTTATTGAGGGGCAAAAATGAGTACACATAGTACGTTGGATATTGTTGTAAATGATATACTTCGAGTGGTCACACCAGTACAAGAAGATTGGGAGATACGATTTGCAATTATTAATGATTTACGAAGTATTGTTGAATCTGTAGAAAGCCTGAGAGGAGCAACTGTTGAGCCATTTGGATCATTTGTATCTAATCTCTTCACGCGATGGGGTGACTTGGATATTTCAATTGAGCTATCAAATGGTTTGCATATTTCATCTGCTGGGAAAAAACAAAAACAAACTTTCTTGGGGGATGTTTTAAAAGCTTTGAGAATGAAAGGTGGAGGGAGCAACTTGCAGTTCATCTCCAATGCACGAGTGCCCATTTTAAAATTTAAAAGCTACCGGCAGGGTGTATCTTGTGACATTTCAATTAATAACCTGCCTGGTCAAATGAAATCCAAGATTTTGCTTTGGATCAACAAGATAGATGGCCGTTTTCGTCATATGGTTTTACTGGTCAAGGAATGGGCCAAAGCACATAAAATCAATAACTCGAAAGCTGGAACTTTCAACTCCTATTCACTAAGTTTGCTTGTGATATTTTATTTTCAGACATGTATTCCTGCAATTTTTCCACCGCTTAAAGATATATACCCTGGCAACATGGTTGATGATCTTATAGGCGTTAGATCTGATGCAGAGAATCTTATTGCACAAACATGTGATGCTAACATAAACCGGTTCATATCAAACAGGGCAAGGTCAATTAACAGAAAATCTGTGGCTGAGCTTTTTGTTGAATTCATAGGAAAGTTTGCTAAGATGGATTCAATGGCCGTGAAGATGGGAATTTGCCCCTATTCTGGAAAATGGGAACAAATAGAGGACAATATGATTTGGTTACCCAAGACTTATGCAATATTTGTTGAGGATCCTTTTGAGCAGCCACAAAATACTGCAAGATCCGTTAGCGCAGGACAACTGAAGAAGATAACTGAGGCATTTGCAAGGACGCATGACTTGCTTACCTCAACAAATCAGAATCAAATTTCACTTTTGTCCAACATGGCACCTGCGCATGTTATAAGATGTATCACAAGGCCTTATGGTGGAGGTTACTTTCACCCAACTCAGCCACAAGTGCAGAGGGCCATACGCCCACAACTGCAGTCGCAACGTCATTTTCAAAATGTCAGTCAAGGAACAAGCTCCAACAGTTCATCTTCAAAAGGACATACATTGGTGCATAGAGGCCAACAGATATGGAGGCCAAAGAGTTAAAAGGGGATCTCTATTACTCCGAAAATGCCATGGTTTTAGCTTTGAACAGGTTTTTACTATTGCCTTTCAGTTTACTTGTTAACACAAGTGATTGAAAGAATGGGATTTTGATTTTTTTTGTGCCCTTGTGGATCAAAAAGTGATCAACCGTGTATATTACATGAGGTTTTGGTGGGGCATTATATTGACGTTTTTACAACTCTTATGTACTTGTGGTAATATTCGGAGCATGCAAGAGTTTAAAATGTGCAACTTTGCATATGAACCACAAATTGTTTTGCTCGTTTACCAAGTCGCATTATAGTAGTATTGGTAACCGACAAAGATTTAATAAGGGTAATAGAGACTTATAAATGTTGTAACACACTTTTGACAGACTTTTCATTCATTTTTTATTAGGTGAAATAATGGGAGCTTCACTTAATCTGGGCACACTGAGACCTACGTGTAAGTGATTTAGTTATGG

Coding sequences of Glyma18g03913

Limit To All Plant Sequences

>Glyma18g03913.1   sequence type=CDS   gene model=Glyma18g03913   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTACACATAGTACGTTGGATATTGTTGTAAATGATATACTTCGAGTGGTCACACCAGTACAAGAAGATTGGGAGATACGATTTGCAATTATTAATGATTTACGAAGTATTGTTGAATCTGTAGAAAGCCTGAGAGGAGCAACTGTTGAGCCATTTGGATCATTTGTATCTAATCTCTTCACGCGATGGGGTGACTTGGATATTTCAATTGAGCTATCAAATGGTTTGCATATTTCATCTGCTGGGAAAAAACAAAAACAAACTTTCTTGGGGGATGTTTTAAAAGCTTTGAGAATGAAAGGTGGAGGGAGCAACTTGCAGTTCATCTCCAATGCACGAGTGCCCATTTTAAAATTTAAAAGCTACCGGCAGGGTGTATCTTGTGACATTTCAATTAATAACCTGCCTGGTCAAATGAAATCCAAGATTTTGCTTTGGATCAACAAGATAGATGGCCGTTTTCGTCATATGGTTTTACTGGTCAAGGAATGGGCCAAAGCACATAAAATCAATAACTCGAAAGCTGGAACTTTCAACTCCTATTCACTAAGTTTGCTTGTGATATTTTATTTTCAGACATGTATTCCTGCAATTTTTCCACCGCTTAAAGATATATACCCTGGCAACATGGTTGATGATCTTATAGGCGTTAGATCTGATGCAGAGAATCTTATTGCACAAACATGTGATGCTAACATAAACCGGTTCATATCAAACAGGGCAAGGTCAATTAACAGAAAATCTGTGGCTGAGCTTTTTGTTGAATTCATAGGAAAGTTTGCTAAGATGGATTCAATGGCCGTGAAGATGGGAATTTGCCCCTATTCTGGAAAATGGGAACAAATAGAGGACAATATGATTTGGTTACCCAAGACTTATGCAATATTTGTTGAGGATCCTTTTGAGCAGCCACAAAATACTGCAAGATCCGTTAGCGCAGGACAACTGAAGAAGATAACTGAGGCATTTGCAAGGACGCATGACTTGCTTACCTCAACAAATCAGAATCAAATTTCACTTTTGTCCAACATGGCACCTGCGCATGTTATAAGATGTATCACAAGGCCTTATGGTGGAGGTTACTTTCACCCAACTCAGCCACAAGTGCAGAGGGCCATACGCCCACAACTGCAGTCGCAACGTCATTTTCAAAATGTCAGTCAAGGAACAAGCTCCAACAGTTCATCTTCAAAAGGACATACATTGGTGCATAGAGGCCAACAGATATGGAGGCCAAAGAGTTAA

>Glyma18g03913.2   sequence type=CDS   gene model=Glyma18g03913   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTACACATAGTACGTTGGATATTGTTGTAAATGATATACTTCGAGTGGTCACACCAGTACAAGAAGATTGGGAGATACGATTTGCAATTATTAATGATTTACGAAGTATTGTTGAATCTGTAGAAAGCCTGAGAGGAGCAACTGTTGAGCCATTTGGATCATTTGTATCTAATCTCTTCACGCGATGGGGTGACTTGGATATTTCAATTGAGCTATCAAATGGTTTGCATATTTCATCTGCTGGGAAAAAACAAAAACAAACTTTCTTGGGGGATGTTTTAAAAGCTTTGAGAATGAAAGGTGGAGGGAGCAACTTGCAGTTCATCTCCAATGCACGAGTGCCCATTTTAAAATTTAAAAGCTACCGGCAGGGTGTATCTTGTGACATTTCAATTAATAACCTGCCTGGTCAAATGAAATCCAAGATTTTGCTTTGGATCAACAAGATAGATGGCCGTTTTCGTCATATGGTTTTACTGGTCAAGGAATGGGCCAAAGCACATAAAATCAATAACTCGAAAGCTGGAACTTTCAACTCCTATTCACTAAGTTTGCTTGTGATATTTTATTTTCAGACATGTATTCCTGCAATTTTTCCACCGCTTAAAGATATATACCCTGGCAACATGGTTGATGATCTTATAGGCGTTAGATCTGATGCAGAGAATCTTATTGCACAAACATGTGATGCTAACATAAACCGGTTCATATCAAACAGGGCAAGGTCAATTAACAGAAAATCTGTGGCTGAGCTTTTTGTTGAATTCATAGGAAAGTTTGCTAAGATGGATTCAATGGCCGTGAAGATGGGAATTTGCCCCTATTCTGGAAAATGGGAACAAATAGAGGACAATATGATTTGGTTACCCAAGACTTATGCAATATTTGTTGAGGATCCTTTTGAGCAGCCACAAAATACTGCAAGATCCGTTAGCGCAGGACAACTGAAGAAGATAACTGAGGCATTTGCAAGGACGCATGACTTGCTTACCTCAACAAATCAGAATCAAATTTCACTTTTGTCCAACATGGCACCTGCGCATGTTATAAGATGTATCACAAGGCCTTATGGTGGAGGTTACTTTCACCCAACTCAGCCACAAGTGCAGAGGGCCATACGCCCACAACTGCAGTCGCAACGTCATTTTCAAAATGTCAGTCAAGGAACAAGCTCCAACAGTTCATCTTCAAAAGGACATACATTGGTGCATAGAGGCCAACAGATATGGAGGCCAAAGAGTTAA

>Glyma18g03913.3   sequence type=CDS   gene model=Glyma18g03913   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTACACATAGTACGTTGGATATTGTTGTAAATGATATACTTCGAGTGGTCACACCAGTACAAGAAGATTGGGAGATACGATTTGCAATTATTAATGATTTACGAAGTATTGTTGAATCTGTAGAAAGCCTGAGAGGAGCAACTGTTGAGCCATTTGGATCATTTGTATCTAATCTCTTCACGCGATGGGGTGACTTGGATATTTCAATTGAGCTATCAAATGGTTTGCATATTTCATCTGCTGGGAAAAAACAAAAACAAACTTTCTTGGGGGATGTTTTAAAAGCTTTGAGAATGAAAGGTGGAGGGAGCAACTTGCAGTTCATCTCCAATGCACGAGTGCCCATTTTAAAATTTAAAAGCTACCGGCAGGGTGTATCTTGTGACATTTCAATTAATAACCTGCCTGGTCAAATGAAATCCAAGATTTTGCTTTGGATCAACAAGATAGATGGCCGTTTTCGTCATATGGTTTTACTGGTCAAGGAATGGGCCAAAGCACATAAAATCAATAACTCGAAAGCTGGAACTTTCAACTCCTATTCACTAAGTTTGCTTGTGATATTTTATTTTCAGACATGTATTCCTGCAATTTTTCCACCGCTTAAAGATATATACCCTGGCAACATGGTTGATGATCTTATAGGCGTTAGATCTGATGCAGAGAATCTTATTGCACAAACATGTGATGCTAACATAAACCGGTTCATATCAAACAGGGCAAGGTCAATTAACAGAAAATCTGTGGCTGAGCTTTTTGTTGAATTCATAGGAAAGTTTGCTAAGATGGATTCAATGGCCGTGAAGATGGGAATTTGCCCCTATTCTGGAAAATGGGAACAAATAGAGGACAATATGATTTGGTTACCCAAGACTTATGCAATATTTGTTGAGGATCCTTTTGAGCAGCCACAAAATACTGCAAGATCCGTTAGCGCAGGACAACTGAAGAAGATAACTGAGGCATTTGCAAGGACGCATGACTTGCTTACCTCAACAAATCAGAATCAAATTTCACTTTTGTCCAACATGGCACCTGCGCATGTTATAAGATGTATCACAAGGCCTTATGGTGGAGGTTACTTTCACCCAACTCAGCCACAAGTGCAGAGGGCCATACGCCCACAACTGCAGTCGCAACGTCATTTTCAAAATGTCAGTCAAGGAACAAGCTCCAACAGTTCATCTTCAAAAGGACATACATTGGTGCATAGAGGCCAACAGATATGGAGGCCAAAGAGTTAA

Predicted protein sequences of Glyma18g03913

Limit To All Plant Sequences

>Glyma18g03913.1   sequence type=predicted peptide   gene model=Glyma18g03913   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTHSTLDIVVNDILRVVTPVQEDWEIRFAIINDLRSIVESVESLRGATVEPFGSFVSNLFTRWGDLDISIELSNGLHISSAGKKQKQTFLGDVLKALRMKGGGSNLQFISNARVPILKFKSYRQGVSCDISINNLPGQMKSKILLWINKIDGRFRHMVLLVKEWAKAHKINNSKAGTFNSYSLSLLVIFYFQTCIPAIFPPLKDIYPGNMVDDLIGVRSDAENLIAQTCDANINRFISNRARSINRKSVAELFVEFIGKFAKMDSMAVKMGICPYSGKWEQIEDNMIWLPKTYAIFVEDPFEQPQNTARSVSAGQLKKITEAFARTHDLLTSTNQNQISLLSNMAPAHVIRCITRPYGGGYFHPTQPQVQRAIRPQLQSQRHFQNVSQGTSSNSSSSKGHTLVHRGQQIWRPKS*

>Glyma18g03913.2   sequence type=predicted peptide   gene model=Glyma18g03913   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTHSTLDIVVNDILRVVTPVQEDWEIRFAIINDLRSIVESVESLRGATVEPFGSFVSNLFTRWGDLDISIELSNGLHISSAGKKQKQTFLGDVLKALRMKGGGSNLQFISNARVPILKFKSYRQGVSCDISINNLPGQMKSKILLWINKIDGRFRHMVLLVKEWAKAHKINNSKAGTFNSYSLSLLVIFYFQTCIPAIFPPLKDIYPGNMVDDLIGVRSDAENLIAQTCDANINRFISNRARSINRKSVAELFVEFIGKFAKMDSMAVKMGICPYSGKWEQIEDNMIWLPKTYAIFVEDPFEQPQNTARSVSAGQLKKITEAFARTHDLLTSTNQNQISLLSNMAPAHVIRCITRPYGGGYFHPTQPQVQRAIRPQLQSQRHFQNVSQGTSSNSSSSKGHTLVHRGQQIWRPKS*

>Glyma18g03913.3   sequence type=predicted peptide   gene model=Glyma18g03913   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTHSTLDIVVNDILRVVTPVQEDWEIRFAIINDLRSIVESVESLRGATVEPFGSFVSNLFTRWGDLDISIELSNGLHISSAGKKQKQTFLGDVLKALRMKGGGSNLQFISNARVPILKFKSYRQGVSCDISINNLPGQMKSKILLWINKIDGRFRHMVLLVKEWAKAHKINNSKAGTFNSYSLSLLVIFYFQTCIPAIFPPLKDIYPGNMVDDLIGVRSDAENLIAQTCDANINRFISNRARSINRKSVAELFVEFIGKFAKMDSMAVKMGICPYSGKWEQIEDNMIWLPKTYAIFVEDPFEQPQNTARSVSAGQLKKITEAFARTHDLLTSTNQNQISLLSNMAPAHVIRCITRPYGGGYFHPTQPQVQRAIRPQLQSQRHFQNVSQGTSSNSSSSKGHTLVHRGQQIWRPKS*

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