Glyma18g03820 - SoyBase

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Report for Sequence Feature Glyma18g03820

Feature Type:	gene_model
Chromosome:	Gm18
Start:	2625562
stop:	2633264
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g03820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G05980	AT	Annotation by Michelle Graham. TAIR10: DHFS-FPGS homolog B \| chr5:1799738-1804177 REVERSE LENGTH=513	SoyBase	E_val: 0	ISS
GO:0006730	GO-bp	Annotation by Michelle Graham. GO Biological Process: one-carbon metabolic process	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0009396	GO-bp	Annotation by Michelle Graham. GO Biological Process: folic acid-containing compound biosynthetic process	SoyBase	N/A	ISS
GO:0010449	GO-bp	Annotation by Michelle Graham. GO Biological Process: root meristem growth	SoyBase	N/A	ISS
GO:0046901	GO-bp	Annotation by Michelle Graham. GO Biological Process: tetrahydrofolylpolyglutamate biosynthetic process	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0004326	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tetrahydrofolylpolyglutamate synthase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016874	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ligase activity	SoyBase	N/A	ISS
KOG2525	KOG	Folylpolyglutamate synthase	JGI		ISS
PTHR11136	Panther	FOLYLPOLYGLUTAMATE SYNTHASE-RELATED	JGI		ISS
PF08245	PFAM	Mur ligase middle domain	JGI		ISS
UniRef100_I1MZ89	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Folylpolyglutamate synthase n=1 Tax=Glycine max RepID=I1MZ89_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F413	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F413 related cluster n=1 Tax=unknown RepID=UPI000233F413	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g03820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g03820 not represented in the dataset	Glyma18g03820 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g03820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g034200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g03820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g03820

Limit To All Plant Sequences

>Glyma18g03820.2   sequence type=transcript   gene model=Glyma18g03820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAGACTCTATGACGTGGCAATTCCGCTAATGTTTGGTCAGCATCGTTCAGAAGAGAATGTCATTGACATTCTAAGTTCTAACTCAAGACAAAACACTACTCTTCTCTTTCCATCTTTCGATCCAACCTTCAGTTTTCTCACAACACCCCCATGGCTCAAGGAGATAATGGGTCCTCCAAATCTTCGTCAGTGACTCCGTATGAAGAAGCATTGGATGCCTTGTCATCTCTGATCACTAAACGCACTCGTGTCGGTGATGTCAATATGGAGGAACGATTCAACGTGCTTTATAAGTACCTAAAGATGCTTGATTTGGAGGAGGCGATTTCAAATATGAAGATTATCCATGTTGCTGGCACCAAAGGGAAGGGATCTACATGCACCTTCACAGAATCTATATTACGCAACTGTGGATTTCGCACTGGGCTTTTCACTTCTCCTCACCTAATTGATATCCGAGAAAGGTTTCGTTTAGATGGTGTGGAAATCTCTGAAGAGAAATTTTTAGTTTATTTTTGGTGGTGTTATGATAGACTAAAGGAAAATACTGATGACAATGTTCCAATGCCTACATTTTTTCACTTCCTTGCTTTACTTGCCTTCAAGATATTTGCAGCAGAGCAGGTAGATGTTTCTATAATGGAGGTTGGATTAGGTGGAAAATATGATGCAACGAATGTGGTCCCAACACCTATTGTGTGTGGTATAACCTCCCTTGGGTATGACCACATGGAGATTCTTGGGAATACTCTTGGAGAAATTGCTGGTGAGAAAGCTGGTATCTTCAAGCATCGGATTCCAGCATTTACTGTGCCTCAACCTGATGAAGCAATGCATGTACTCAGAGAGAAGGCTTCTCAGTTAAATGTACCTCTTCAAGTGGTAACCCCATTAGATGCCAAATTGCTAAATGGTTCAAGACTAGCGCTTGGAGGTGAACACCAATATATAAATGCTGGTCTTGCTATTGCATTATGCTCTACGTGGCTGAAAATGAATGGGCATCTTGAAGACTCGTACTTGAAACATATACAACACACTTTACCAGAGAAGTTCATAAAAGGGTTAACAACTGCAAGTTTGCAAGGAAGGGCTCAGATTGTTCCTGATCAGTTCATCAATGATGAAATACCAAATGAACTTGTCTTCTTTTTAGATGGGGCTCATAGTCCTGAAAGCATGGAAGCATGTGCCAGGTGGTTTTCTCTTGCTATTAAAGATCAAGACCAGATTTTGTTTCATCAGAAACTTGATAATTCTAACTTCTCAAACCAAGTAGTGAAGATGCACAATGGTGAAACTGTACAGAAGAAATCCACACAGATTTTGCTGTTCAATTGTATGTCTGAGCGAAACCCTCAGTTGCTTCTTCCCCACTTGATGAAAACATGTGCTGATCATGGTGTCTACTTCAAGAAGGCACTCTTTGTACCTGGTTTATCAGTGTATCACAAAGTTGGATCCCATGCTTTACCAGCGACAGATTCTGATGTTGACCTGTCGTGGCAGCTTACTCTACAAAGAGTGTGGGAAAATCTCATGCAAGGGAACAAAGAAGGCAAGAGTAATAATTCTGCTCCTGAAGAATTAAACATGGAAATGAGTGCCAGCAATTGTGAACACAGTGCCGTGTTTTCCTCATTGCCACTGGTTCTCAAATGGCTTAGGGACACGGTGCAACAAAACCAGTCAACTCGTTTTCAGGTCCTTGTTACTGGTTCTATACATCTTATTGGTGACATGTTGAAATTAGTCAAGAAGTGATTCGTTGGGCTACTTGAAAGATTGGCTTTCATTCAGATTTTTTAAGTACCACTATTTGAGTCCATGAAAGTGCTGTTACACTTGGTTCAAAAGCTGTTGACAGAAGGTTATCAATATAATAACTACATTCTTGATTGTAGACATTGATGCATCCATTACATTGGTTTAAATCAGCATCACTCTGGCTACTTCGTGGGTCTTTCAACTTTCATTTCACTGTAATTGAAAATAAAGGTGGATTAAGGGACATGAATAAAGAATAACATCTATCAATTTTCTTAGCATCATTCTTTAAATTT

Coding sequences of Glyma18g03820

Limit To All Plant Sequences

>Glyma18g03820.1   sequence type=CDS   gene model=Glyma18g03820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAAGGAGATAATGGGTCCTCCAAATCTTCGTCAGTGACTCCGTATGAAGAAGCATTGGATGCCTTGTCATCTCTGATCACTAAACGCACTCGTGTCGGTGATGTCAATATGGAGGAACGATTCAACGTGCTTTATAAGTACCTAAAGATGCTTGATTTGGAGGAGGCGATTTCAAATATGAAGATTATCCATGTTGCTGGCACCAAAGGGAAGGGATCTACATGCACCTTCACAGAATCTATATTACGCAACTGTGGATTTCGCACTGGGCTTTTCACTTCTCCTCACCTAATTGATATCCGAGAAAGGTTTCGTTTAGATGGTGTGGAAATCTCTGAAGAGAAATTTTTAGTTTATTTTTGGTGGTGTTATGATAGACTAAAGGAAAATACTGATGACAATGTTCCAATGCCTACATTTTTTCACTTCCTTGCTTTACTTGCCTTCAAGATATTTGCAGCAGAGCAGGTAGATGTTTCTATAATGGAGGTTGGATTAGGTGGAAAATATGATGCAACGAATGTGGTCCCAACACCTATTGTGTGTGGTATAACCTCCCTTGGGTATGACCACATGGAGATTCTTGGGAATACTCTTGGAGAAATTGCTGGTGAGAAAGCTGGTATCTTCAAGCATCGGATTCCAGCATTTACTGTGCCTCAACCTGATGAAGCAATGCATGTACTCAGAGAGAAGGCTTCTCAGTTAAATGTACCTCTTCAAGTGGTAACCCCATTAGATGCCAAATTGCTAAATGGTTCAAGACTAGCGCTTGGAGGTGAACACCAATATATAAATGCTGGTCTTGCTATTGCATTATGCTCTACGTGGCTGAAAATGAATGGGCATCTTGAAGACTCGTACTTGAAACATATACAACACACTTTACCAGAGAAGTTCATAAAAGGGTTAACAACTGCAAGTTTGCAAGGAAGGGCTCAGATTGTTCCTGATCAGTTCATCAATGATGAAATACCAAATGAACTTGTCTTCTTTTTAGATGGGGCTCATAGTCCTGAAAGCATGGAAGCATGTGCCAGGTGGTTTTCTCTTGCTATTAAAGATCAAGACCAGATTTTGTTTCATCAGAAACTTGATAATTCTAACTTCTCAAACCAAGTAGTGAAGATGCACAATGGTGAAACTGTACAGAAGAAATCCACACAGATTTTGCTGTTCAATTGTATGTCTGAGCGAAACCCTCAGTTGCTTCTTCCCCACTTGATGAAAACATGTGCTGATCATGGTGTCTACTTCAAGAAGGCACTCTTTGTACCTGGTTTATCAGTGTATCACAAAGTTGGATCCCATGCTTTACCAGCGACAGATTCTGATGTTGACCTGTCGTGGCAGCTTACTCTACAAAGAGTGTGGGAAAATCTCATGCAAGGGAACAAAGAGCCTACTTTAGAATTTCATTGA

>Glyma18g03820.2   sequence type=CDS   gene model=Glyma18g03820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAAGGAGATAATGGGTCCTCCAAATCTTCGTCAGTGACTCCGTATGAAGAAGCATTGGATGCCTTGTCATCTCTGATCACTAAACGCACTCGTGTCGGTGATGTCAATATGGAGGAACGATTCAACGTGCTTTATAAGTACCTAAAGATGCTTGATTTGGAGGAGGCGATTTCAAATATGAAGATTATCCATGTTGCTGGCACCAAAGGGAAGGGATCTACATGCACCTTCACAGAATCTATATTACGCAACTGTGGATTTCGCACTGGGCTTTTCACTTCTCCTCACCTAATTGATATCCGAGAAAGGTTTCGTTTAGATGGTGTGGAAATCTCTGAAGAGAAATTTTTAGTTTATTTTTGGTGGTGTTATGATAGACTAAAGGAAAATACTGATGACAATGTTCCAATGCCTACATTTTTTCACTTCCTTGCTTTACTTGCCTTCAAGATATTTGCAGCAGAGCAGGTAGATGTTTCTATAATGGAGGTTGGATTAGGTGGAAAATATGATGCAACGAATGTGGTCCCAACACCTATTGTGTGTGGTATAACCTCCCTTGGGTATGACCACATGGAGATTCTTGGGAATACTCTTGGAGAAATTGCTGGTGAGAAAGCTGGTATCTTCAAGCATCGGATTCCAGCATTTACTGTGCCTCAACCTGATGAAGCAATGCATGTACTCAGAGAGAAGGCTTCTCAGTTAAATGTACCTCTTCAAGTGGTAACCCCATTAGATGCCAAATTGCTAAATGGTTCAAGACTAGCGCTTGGAGGTGAACACCAATATATAAATGCTGGTCTTGCTATTGCATTATGCTCTACGTGGCTGAAAATGAATGGGCATCTTGAAGACTCGTACTTGAAACATATACAACACACTTTACCAGAGAAGTTCATAAAAGGGTTAACAACTGCAAGTTTGCAAGGAAGGGCTCAGATTGTTCCTGATCAGTTCATCAATGATGAAATACCAAATGAACTTGTCTTCTTTTTAGATGGGGCTCATAGTCCTGAAAGCATGGAAGCATGTGCCAGGTGGTTTTCTCTTGCTATTAAAGATCAAGACCAGATTTTGTTTCATCAGAAACTTGATAATTCTAACTTCTCAAACCAAGTAGTGAAGATGCACAATGGTGAAACTGTACAGAAGAAATCCACACAGATTTTGCTGTTCAATTGTATGTCTGAGCGAAACCCTCAGTTGCTTCTTCCCCACTTGATGAAAACATGTGCTGATCATGGTGTCTACTTCAAGAAGGCACTCTTTGTACCTGGTTTATCAGTGTATCACAAAGTTGGATCCCATGCTTTACCAGCGACAGATTCTGATGTTGACCTGTCGTGGCAGCTTACTCTACAAAGAGTGTGGGAAAATCTCATGCAAGGGAACAAAGAAGGCAAGAGTAATAATTCTGCTCCTGAAGAATTAAACATGGAAATGAGTGCCAGCAATTGTGAACACAGTGCCGTGTTTTCCTCATTGCCACTGGTTCTCAAATGGCTTAGGGACACGGTGCAACAAAACCAGTCAACTCGTTTTCAGGTCCTTGTTACTGGTTCTATACATCTTATTGGTGACATGTTGAAATTAGTCAAGAAGTGA

Predicted protein sequences of Glyma18g03820

Limit To All Plant Sequences

>Glyma18g03820.1   sequence type=predicted peptide   gene model=Glyma18g03820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQGDNGSSKSSSVTPYEEALDALSSLITKRTRVGDVNMEERFNVLYKYLKMLDLEEAISNMKIIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDIRERFRLDGVEISEEKFLVYFWWCYDRLKENTDDNVPMPTFFHFLALLAFKIFAAEQVDVSIMEVGLGGKYDATNVVPTPIVCGITSLGYDHMEILGNTLGEIAGEKAGIFKHRIPAFTVPQPDEAMHVLREKASQLNVPLQVVTPLDAKLLNGSRLALGGEHQYINAGLAIALCSTWLKMNGHLEDSYLKHIQHTLPEKFIKGLTTASLQGRAQIVPDQFINDEIPNELVFFLDGAHSPESMEACARWFSLAIKDQDQILFHQKLDNSNFSNQVVKMHNGETVQKKSTQILLFNCMSERNPQLLLPHLMKTCADHGVYFKKALFVPGLSVYHKVGSHALPATDSDVDLSWQLTLQRVWENLMQGNKEPTLEFH*

>Glyma18g03820.2   sequence type=predicted peptide   gene model=Glyma18g03820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQGDNGSSKSSSVTPYEEALDALSSLITKRTRVGDVNMEERFNVLYKYLKMLDLEEAISNMKIIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDIRERFRLDGVEISEEKFLVYFWWCYDRLKENTDDNVPMPTFFHFLALLAFKIFAAEQVDVSIMEVGLGGKYDATNVVPTPIVCGITSLGYDHMEILGNTLGEIAGEKAGIFKHRIPAFTVPQPDEAMHVLREKASQLNVPLQVVTPLDAKLLNGSRLALGGEHQYINAGLAIALCSTWLKMNGHLEDSYLKHIQHTLPEKFIKGLTTASLQGRAQIVPDQFINDEIPNELVFFLDGAHSPESMEACARWFSLAIKDQDQILFHQKLDNSNFSNQVVKMHNGETVQKKSTQILLFNCMSERNPQLLLPHLMKTCADHGVYFKKALFVPGLSVYHKVGSHALPATDSDVDLSWQLTLQRVWENLMQGNKEGKSNNSAPEELNMEMSASNCEHSAVFSSLPLVLKWLRDTVQQNQSTRFQVLVTGSIHLIGDMLKLVKK*

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