SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G39870 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55690.1); Has 73 Blast hits to 71 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:16643697-16644950 FORWARD LENGTH=330 | SoyBase | E_val: 7.00E-22 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_UPI000233E437 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E437 related cluster n=1 Tax=unknown RepID=UPI000233E437 | SoyBase | E_val: 0 | ISS |
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Glyma18g03580 not represented in the dataset |
Glyma18g03580 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g34710 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g031800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g03580.1 sequence type=CDS gene model=Glyma18g03580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTCCAACTCCCTACTACCAGTACTACCCCTCTCCCCATTCTCTCTTTCTTTGTTGGGACTTCCACCATGAGTGACGCCGGCCTCTGCCTTCCGCCGCAGTTCCTCGCCGGAGACACCCACAGAACCCTTTCGAACTCCGATTTCAGCTTCCCTTCGGAGTTCCCTTACGAGTTCCGAGTGTCTTCTCCGCCCTCCACGGAGACCGAGAGCAGCGACGGCGAAGAGGACTTCCTCGCCGGCCTCACTCGCCGACTCAGTCAGACCTCGCTTCACGAAGCTCGCAAGCAGTTCTCTACTGTTTCGGAGATTCCAAGGAAGACCCGTCAGGGTTTGGTCGGTTCCCCTCAGTCGACGCTCGCCGGAATCGGCAGCTGGTCCGGTCGGAGCACCATTTCCGGCGAAGGAAGCCCCAACGGGTACACGCGTGTCCCCTCGCCCTCGACGATGCCGTTTGACGAAAACAACGACCCCTGGGAAGTGATTTACGCAGTAGCAGGACAAATCGCAAGGATGAAGATAAACAGCAACAACCAAGTTCCACCACAGTTTGATTTTCACAACAATAGAGGGTTACTCACTCATCATCGCCCTAACCAGAGTTTCAATCAGCTTAACCAAGTTGTGAGAGCAAAGCAACAGTGTGGTTCGGTTTGGGGAAGGCCAACTAAGCCAAACTATTTGGTGCAGCAGCAACAGGTTCAGGTTCAGGTTCAGAACAGAGCGCGTGAGTTTGGACACGATAGTGTGAATGTGAAATGCACTCGTCCATCTGCGTGGCCCCCTTTGCAAGTTGAGCAACAGAATAACCGGGTACAGCTTGGCGGATCGCGGGTTGTTATACCCGGTGGGGGTGGGTCTTCTGTGAAAAAGGGGTGTGGTGGAACTGGGGTGTTCTTGCCTCGCCATTATGAAACCCCTTCTGAGCCACCTCGCAAGAAAACTGGTTGTGCGCCTGTTTTGTTACCAGCAAAGGTGGTTCATGCTTTGAACTTGAATATTGATGACTTGAACGGGACTACCCAACCGCGTTTCTCGAATGCTTTTGCTGTAGATTATGATGCGATTTTAGCGAGGAGAAACGCGCTTCTGATGCAACAGCGAGAAGAGGCAGCTAACTATGAAATTCGCCTCCCTCAAGAGTGGACTTACTGA
>Glyma18g03580.1 sequence type=predicted peptide gene model=Glyma18g03580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLQLPTTSTTPLPILSFFVGTSTMSDAGLCLPPQFLAGDTHRTLSNSDFSFPSEFPYEFRVSSPPSTETESSDGEEDFLAGLTRRLSQTSLHEARKQFSTVSEIPRKTRQGLVGSPQSTLAGIGSWSGRSTISGEGSPNGYTRVPSPSTMPFDENNDPWEVIYAVAGQIARMKINSNNQVPPQFDFHNNRGLLTHHRPNQSFNQLNQVVRAKQQCGSVWGRPTKPNYLVQQQQVQVQVQNRAREFGHDSVNVKCTRPSAWPPLQVEQQNNRVQLGGSRVVIPGGGGSSVKKGCGGTGVFLPRHYETPSEPPRKKTGCAPVLLPAKVVHALNLNIDDLNGTTQPRFSNAFAVDYDAILARRNALLMQQREEAANYEIRLPQEWTY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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