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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G05800 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 881 Blast hits to 512 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 833; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr5:1743234-1744751 REVERSE LENGTH= | SoyBase | E_val: 3.00E-131 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_G7LAN9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: PIF-like protein n=1 Tax=Medicago truncatula RepID=G7LAN9_MEDTR | SoyBase | E_val: 3.00E-25 | ISS |
| UniRef100_UPI000233E434 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E434 related cluster n=1 Tax=unknown RepID=UPI000233E434 | SoyBase | E_val: 0 | ISS |
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Glyma18g03460 not represented in the dataset |
Glyma18g03460 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g34860 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g030600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g03460.2 sequence type=transcript gene model=Glyma18g03460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACAATAAATCATAAATGAGAGAAGGTTTCAGAAGCTAATCGCAGGGGAAAAAGAAAGAACAAACATTAATATCTCGAGTATTGAGTTTCGGAAGCGCTTACGACGATCAAATTCACGTTTATTCCTAATGCAGCATTGTCCTTGAACTTCAGAACATTTTCATGGTACAAGGATGTCCAATCCAGCTTCAAAAGCCACTTGGACACCTGGGTTCCATAGAGTATTTGTTGATTTATGCCTTGGAGAAATGCTGAAGAATGAGCCCGGGTCAACACGAATTACCAAGGCAGGTTGGAGGAACATTGTTGGATCCTTTTATGCGAAGACTGGTGTGAGATATGACAAGAAGCAGTTTAAGAATCACTATGATTCTACCAGAAAACTATGGAAAGTCTGGGTCAAGTTGACTGAAGATAGCAACATGAAGTGGGATCCAGAAACGGGGGCATTTGGTGCTTCCGAGGAAGACTGGCAAAATTATGTAAAGGCAATTCCAGAAGCTGCCCAGTTTCAGTCTAAGGAAATCCAGTTTAAAGACAAACTGGATATCATCTTTGATGGAGGGAATCGAATTGAGGAAGTGAAAAGGTGGGCCAGTCTCAAGTGGCAGAATGATTCTTCAACTACATCTCCCTTGTGTGGAAGAGAGCGAGAGAAGAAACGCAAGAATTTTGATAGGGATTGTGAATTAGATAGTACGATTGTGGTTGACTATTCGCCAACACCAAAAGCTTCTTGGTCACCTGCATACCATAAAATGTTTGTTGACTTATGCATCGAAGAAACATTGAAGGGGAACAAGTCTGCGACGCATTTTACCAAGGAGGGCTGGAGGAATATTGTTGGATCCTTTAATGCAAAGACTGGTATGAGATATGACAAAAAACAAATTAAGAATCACTATGATTCAACCCGGAAACTATGGAAAATCTGGGCTAAGTTGACTGGTGATGACAACATGAAATGGGACCCCCAAACCAATACTTTTGGTGCTTCTGAGGAAGACTGGCACAATTGTATAAAGGCATTCCCAGAAGCTGCACAATTTCGGTTTAAGGAACTCCAGTTTTCTGACAAATTAAACGTCATCTTTGATGGAGCTATGCCAACTGAGGAAATGATAACAAGGCTTAAGAGGCAGAATGATGCTTCAGCTACATTGCGTGGAAAAGAGCGTGAGAAGAAACGCAGGAATGTTGGTCGGGATTGTGGATTAAAGAGTGCCATTATGGTTAATGCCATCCCAATCAGTACAATTCCAAGTGAGCAGAGCATGTCCAGTTCATCATATACCAAGGTCAAAGCCACGTGGACTCCTACACTGCACAAGATCTTTGTTGATCTATGTATGCAAGAGACATTAAAGGGGAATAAGCCTGGGACACATTTTACAAAGGAAGGTTGGAAGAACATTATGGAATCATTTTATGCAAAAACTGGTGTGAATTATGGTAGACTACAACTTAAGAATCACTGGGATTCTACCAAGGAACAATGGAGAACCTGGTGTAAGCTTATTGGCACCAGTTACATGAAATGGGATCCATCTGACCAGAAGTTTGAGGCTAGTGAAGAAGATTGGACCAACTATTTACAGGAAAATCCAGAAGCTGCACAATTTCGCTATAAGGAACTAAAATTCACTGACCAATTGGAAACCATCTTTAATGGAACTACTGTTACTGGAGAGACTGAACCTGCTGTGCAACAAAGGAAAAGTGACGATAGTGTTGTTACTTTCCCTTTACACATAAAAGAGCCTGATACAGACAACTTCGACGAGAAAACTGAATGTCATTGTGATGTTGTTGCGTCAAGAAATGGTGTGAGTATTCAGAAGAATGCTAGTGCAGTTTCATCAACTGAAGGTAAACGCAATTATAGTATCGGTGAATGCATTGAATGCCTTGATAGAATGGAAGAAATAGAGCAAGGAAGTGATCTCTACATGTTTGCTTTAGATGTATTCCTTAAGCAGGAATATAGGGAAATTTTTCTGCAGTTGAAAACGCCTAATCTGAGGATCTCGTGGTTGCAGCGGCTTCAGTCTTGTGGTCCACCTCCAGTCTAGGGTTTTGTCATACTTGCATAGTTTTTTTTTTAGTTTGTAGTTCTTCATAGAATGTGGTGTGCTTAGGCAATGGTCTGTTCCTTACAATATGACGATGATATAACTTTTCAGGGGGTGATTTCCCAAACGTGACTGCACTTGGAAGCTTAAAAATGTATATCAATAACTATTGACGCATTAATGTAATGGCTGATAAATAGAAGAGGAATCTCTTAATATTATTTTGACGTTATTTTGTTGCAGTTACTTTTCCATTTGCCTTTGATTTTAAACCAGTCAGATA
>Glyma18g03460.1 sequence type=CDS gene model=Glyma18g03460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCAATCCAGCTTCAAAAGCCACTTGGACACCTGGGTTCCATAGAGTATTTGTTGATTTATGCCTTGGAGAAATGCTGAAGAATGAGCCCGGGTCAACACGAATTACCAAGGCAGGTTGGAGGAACATTGTTGGATCCTTTTATGCGAAGACTGGTGTGAGATATGACAAGAAGCAGTTTAAGAATCACTATGATTCTACCAGAAAACTATGGAAAGTCTGGGTCAAGTTGACTGAAGATAGCAACATGAAGTGGGATCCAGAAACGGGGGCATTTGGTGCTTCCGAGGAAGACTGGCAAAATTATGTAAAGGCAATTCCAGAAGCTGCCCAGTTTCAGTCTAAGGAAATCCAGTTTAAAGACAAACTGGATATCATCTTTGATGGAGGGAATCGAATTGAGGAAGTGAAAAGGTGGGCCAGTCTCAAGTGGCAGAATGATTCTTCAACTACATCTCCCTTGTGTGGAAGAGAGCGAGAGAAGAAACGCAAGAATTTTGATAGGGATTGTGAATTAGATAGTACGATTGTGGTTGACTATTCGCCAACACCAAAAGCTTCTTGGTCACCTGCATACCATAAAATGTTTGTTGACTTATGCATCGAAGAAACATTGAAGGGGAACAAGTCTGCGACGCATTTTACCAAGGAGGGCTGGAGGAATATTGTTGGATCCTTTAATGCAAAGACTGGTATGAGATATGACAAAAAACAAATTAAGAATCACTATGATTCAACCCGGAAACTATGGAAAATCTGGGCTAAGTTGACTGGTGATGACAACATGAAATGGGACCCCCAAACCAATACTTTTGGTGCTTCTGAGGAAGACTGGCACAATTGTATAAAGGCATTCCCAGAAGCTGCACAATTTCGGTTTAAGGAACTCCAGTTTTCTGACAAATTAAACGTCATCTTTGATGGAGCTATGCCAACTGAGGAAATGATAACAAGGCTTAAGAGGCAGAATGATGCTTCAGCTACATTGCGTGGAAAAGAGCGTGAGAAGAAACGCAGGAATGTTGGTCGGGATTGTGGATTAAAGAGTGCCATTATGGTTAATGCCATCCCAATCAGTACAATTCCAAGTGAGCAGAGCATGTCCAGTTCATCATATACCAAGGTCAAAGCCACGTGGACTCCTACACTGCACAAGATCTTTGTTGATCTATGTATGCAAGAGACATTAAAGGGGAATAAGCCTGGGACACATTTTACAAAGGAAGGTTGGAAGAACATTATGGAATCATTTTATGCAAAAACTGGTGTGAATTATGGTAGACTACAACTTAAGAATCACTGGGATTCTACCAAGGAACAATGGAGAACCTGGTGTAAGCTTATTGGCACCAGTTACATGAAATGGGATCCATCTGACCAGAAGTTTGAGGCTAGTGAAGAAGATTGGACCAACTATTTACAGGAAAATCCAGAAGCTGCACAATTTCGCTATAAGGAACTAAAATTCACTGACCAATTGGAAACCATCTTTAATGGAACTACTGTTACTGGAGAGACTGAACCTGCTGTGCAACAAAGGAAAAGTGACGATAGTGTTGTTACTTTCCCTTTACACATAAAAGAGCCTGATACAGACAACTTCGACGAGAAAACTGAATGTCATTGTGATGTTGTTGCGTCAAGAAATGGTGTGAGTATTCAGAAGAATGCTAGTGCAGTTTCATCAACTGAAGGTAAACGCAATTATAGTATCGGTGAATGCATTGAATGCCTTGATAGAATGGAAGAAATAGAGCAAGGAAGTGATCTCTACATGTTTGCTTTAGATGTATTCCTTAAGCAGGAATATAGGGAAATTTTTCTGCAGTTGAAAACGCCTAATCTGAGGATCTCGTGGTTGCAGCGGCTTCAGTCTTGTGGTCCACCTCCAGTCTAG >Glyma18g03460.2 sequence type=CDS gene model=Glyma18g03460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCAATCCAGCTTCAAAAGCCACTTGGACACCTGGGTTCCATAGAGTATTTGTTGATTTATGCCTTGGAGAAATGCTGAAGAATGAGCCCGGGTCAACACGAATTACCAAGGCAGGTTGGAGGAACATTGTTGGATCCTTTTATGCGAAGACTGGTGTGAGATATGACAAGAAGCAGTTTAAGAATCACTATGATTCTACCAGAAAACTATGGAAAGTCTGGGTCAAGTTGACTGAAGATAGCAACATGAAGTGGGATCCAGAAACGGGGGCATTTGGTGCTTCCGAGGAAGACTGGCAAAATTATGTAAAGGCAATTCCAGAAGCTGCCCAGTTTCAGTCTAAGGAAATCCAGTTTAAAGACAAACTGGATATCATCTTTGATGGAGGGAATCGAATTGAGGAAGTGAAAAGGTGGGCCAGTCTCAAGTGGCAGAATGATTCTTCAACTACATCTCCCTTGTGTGGAAGAGAGCGAGAGAAGAAACGCAAGAATTTTGATAGGGATTGTGAATTAGATAGTACGATTGTGGTTGACTATTCGCCAACACCAAAAGCTTCTTGGTCACCTGCATACCATAAAATGTTTGTTGACTTATGCATCGAAGAAACATTGAAGGGGAACAAGTCTGCGACGCATTTTACCAAGGAGGGCTGGAGGAATATTGTTGGATCCTTTAATGCAAAGACTGGTATGAGATATGACAAAAAACAAATTAAGAATCACTATGATTCAACCCGGAAACTATGGAAAATCTGGGCTAAGTTGACTGGTGATGACAACATGAAATGGGACCCCCAAACCAATACTTTTGGTGCTTCTGAGGAAGACTGGCACAATTGTATAAAGGCATTCCCAGAAGCTGCACAATTTCGGTTTAAGGAACTCCAGTTTTCTGACAAATTAAACGTCATCTTTGATGGAGCTATGCCAACTGAGGAAATGATAACAAGGCTTAAGAGGCAGAATGATGCTTCAGCTACATTGCGTGGAAAAGAGCGTGAGAAGAAACGCAGGAATGTTGGTCGGGATTGTGGATTAAAGAGTGCCATTATGGTTAATGCCATCCCAATCAGTACAATTCCAAGTGAGCAGAGCATGTCCAGTTCATCATATACCAAGGTCAAAGCCACGTGGACTCCTACACTGCACAAGATCTTTGTTGATCTATGTATGCAAGAGACATTAAAGGGGAATAAGCCTGGGACACATTTTACAAAGGAAGGTTGGAAGAACATTATGGAATCATTTTATGCAAAAACTGGTGTGAATTATGGTAGACTACAACTTAAGAATCACTGGGATTCTACCAAGGAACAATGGAGAACCTGGTGTAAGCTTATTGGCACCAGTTACATGAAATGGGATCCATCTGACCAGAAGTTTGAGGCTAGTGAAGAAGATTGGACCAACTATTTACAGGAAAATCCAGAAGCTGCACAATTTCGCTATAAGGAACTAAAATTCACTGACCAATTGGAAACCATCTTTAATGGAACTACTGTTACTGGAGAGACTGAACCTGCTGTGCAACAAAGGAAAAGTGACGATAGTGTTGTTACTTTCCCTTTACACATAAAAGAGCCTGATACAGACAACTTCGACGAGAAAACTGAATGTCATTGTGATGTTGTTGCGTCAAGAAATGGTGTGAGTATTCAGAAGAATGCTAGTGCAGTTTCATCAACTGAAGGTAAACGCAATTATAGTATCGGTGAATGCATTGAATGCCTTGATAGAATGGAAGAAATAGAGCAAGGAAGTGATCTCTACATGTTTGCTTTAGATGTATTCCTTAAGCAGGAATATAGGGAAATTTTTCTGCAGTTGAAAACGCCTAATCTGAGGATCTCGTGGTTGCAGCGGCTTCAGTCTTGTGGTCCACCTCCAGTCTAG
>Glyma18g03460.1 sequence type=predicted peptide gene model=Glyma18g03460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSNPASKATWTPGFHRVFVDLCLGEMLKNEPGSTRITKAGWRNIVGSFYAKTGVRYDKKQFKNHYDSTRKLWKVWVKLTEDSNMKWDPETGAFGASEEDWQNYVKAIPEAAQFQSKEIQFKDKLDIIFDGGNRIEEVKRWASLKWQNDSSTTSPLCGREREKKRKNFDRDCELDSTIVVDYSPTPKASWSPAYHKMFVDLCIEETLKGNKSATHFTKEGWRNIVGSFNAKTGMRYDKKQIKNHYDSTRKLWKIWAKLTGDDNMKWDPQTNTFGASEEDWHNCIKAFPEAAQFRFKELQFSDKLNVIFDGAMPTEEMITRLKRQNDASATLRGKEREKKRRNVGRDCGLKSAIMVNAIPISTIPSEQSMSSSSYTKVKATWTPTLHKIFVDLCMQETLKGNKPGTHFTKEGWKNIMESFYAKTGVNYGRLQLKNHWDSTKEQWRTWCKLIGTSYMKWDPSDQKFEASEEDWTNYLQENPEAAQFRYKELKFTDQLETIFNGTTVTGETEPAVQQRKSDDSVVTFPLHIKEPDTDNFDEKTECHCDVVASRNGVSIQKNASAVSSTEGKRNYSIGECIECLDRMEEIEQGSDLYMFALDVFLKQEYREIFLQLKTPNLRISWLQRLQSCGPPPV* >Glyma18g03460.2 sequence type=predicted peptide gene model=Glyma18g03460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSNPASKATWTPGFHRVFVDLCLGEMLKNEPGSTRITKAGWRNIVGSFYAKTGVRYDKKQFKNHYDSTRKLWKVWVKLTEDSNMKWDPETGAFGASEEDWQNYVKAIPEAAQFQSKEIQFKDKLDIIFDGGNRIEEVKRWASLKWQNDSSTTSPLCGREREKKRKNFDRDCELDSTIVVDYSPTPKASWSPAYHKMFVDLCIEETLKGNKSATHFTKEGWRNIVGSFNAKTGMRYDKKQIKNHYDSTRKLWKIWAKLTGDDNMKWDPQTNTFGASEEDWHNCIKAFPEAAQFRFKELQFSDKLNVIFDGAMPTEEMITRLKRQNDASATLRGKEREKKRRNVGRDCGLKSAIMVNAIPISTIPSEQSMSSSSYTKVKATWTPTLHKIFVDLCMQETLKGNKPGTHFTKEGWKNIMESFYAKTGVNYGRLQLKNHWDSTKEQWRTWCKLIGTSYMKWDPSDQKFEASEEDWTNYLQENPEAAQFRYKELKFTDQLETIFNGTTVTGETEPAVQQRKSDDSVVTFPLHIKEPDTDNFDEKTECHCDVVASRNGVSIQKNASAVSSTEGKRNYSIGECIECLDRMEEIEQGSDLYMFALDVFLKQEYREIFLQLKTPNLRISWLQRLQSCGPPPV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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