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Report for Sequence Feature Glyma18g03420

Feature Type:gene_model
Chromosome:Gm18
Start:2312289
stop:2316554
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g03420
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G39940AT Annotation by Michelle Graham. TAIR10: RNI-like superfamily protein | chr2:16672848-16675486 REVERSE LENGTH=592 SoyBaseE_val: 0ISS
GO:0002237GO-bp Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009625GO-bp Annotation by Michelle Graham. GO Biological Process: response to insect SoyBaseN/AISS
GO:0009641GO-bp Annotation by Michelle Graham. GO Biological Process: shade avoidance SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009861GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid and ethylene-dependent systemic resistance SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0010103GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis SoyBaseN/AISS
GO:0010118GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal movement SoyBaseN/AISS
GO:0010218GO-bp Annotation by Michelle Graham. GO Biological Process: response to far red light SoyBaseN/AISS
GO:0031146GO-bp Annotation by Michelle Graham. GO Biological Process: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0042752GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm SoyBaseN/AISS
GO:0048443GO-bp Annotation by Michelle Graham. GO Biological Process: stamen development SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0019005GO-cc Annotation by Michelle Graham. GO Cellular Compartment: SCF ubiquitin ligase complex SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG1947 KOG Leucine rich repeat proteins, some proteins contain F-box JGI ISS
PTHR23125Panther F-BOX/LEUCINE RICH REPEAT PROTEIN JGI ISS
PTHR23125:SF128Panther SUBFAMILY NOT NAMED JGI ISS
UniRef100_Q45FY8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Coronatine-insensitive 1 n=1 Tax=Glycine max RepID=Q45FY8_SOYBN SoyBaseE_val: 0ISS
UniRef100_UPI0001CA999FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001CA999F related cluster n=1 Tax=unknown RepID=UPI0001CA999F SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g03420
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g03420
ParalogEvidenceComments
Glyma11g34940 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g03420 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g030200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g03420
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g03420
>Glyma18g03420.1   sequence type=CDS   gene model=Glyma18g03420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGGAGGAACGGAACGTGCGGAAGACACGTGTGGTCGACGTGGTCCTCGACTGCGTCATCCCTTACATCGACGACCCCAAGGACCGCGACGCCGTTTCCCAGGTGTGTCGACGCTGGTACGAGCTCGACTCGCTCACCCGCAAGCACGTCACCATCGCGCTCTGCTACACCACCACCCCGGCTCGCCTCCGCCGCCGCTTCCCGCACCTCGAGTCGCTCAAGCTCAAGGGCAAGCCCCGAGCCGCAATGTTCAACTTGATACCCGAGGATTGGGGCGGACACGTCACTCCCTGGGTCAAAGAGATTTCTCAGTACTTCGATTGCCTCAAGAGCCTCCACTTCCGCCGCATGATTGTCAAGGATTCCGATCTTCAGAATCTCGCTCGTGACCGCGGTCACGTGCTTCACGCTCTCAAGCTTGACAAGTGCTCCGGTTTCACCACCGATGGTCTTTTCCATATCGGTCGCTTTTGCAAGAGTTTAAGAGTCTTGTTTTTGGAGGAAAGCTCAATTCTTGAGAAGGACGGAGAATGGCTACACGAGCTTGCTTTGAATAATACAGTTCTTGAGACTCTCAATTTTTACTTGACAGACATTGCTGTTGTGAAGATTGAGGACCTTGAACTTTTAGCTAAAAATTGCCCCAACTTAGTGTCTGTGAAACTTACTGACTGTGAAATACTGGATCTTGTGAACTTCTTTAAGCATGCCTCTGCGCTGGAAGAGTTTTGTGGAGGCACCTACAACGAGGAACCAGAAAGATACTCTGCTATATCATTACCAGCAAAGTTATGTCGATTGGGTTTAACATATATTGGAAAGAATGAGTTGCCCATTGTGTTCATGTTTGCAGCCGTACTAAAAAAATTGGATCTCCTCTATGCAATGCTAGACACGGAGGATCATTGTATGTTAATCCAAAGGTGTCCAAATCTGGAAGTCCTTGAGACAAGGAATGTAATTGGAGATAGAGGGTTAGAGGTTCTTGGTCGTTGTTGTAAGAGGCTAAAAAGGCTTAGGATTGAAAGGGGCGATGATGATCAAGGAATGGAGGATGAAGAAGGTACTGTGTCCCATAGAGGGCTAATAGCCTTGTCACAGGGCTGTTCAGAGCTTGAATACATGGCTGTTTATGTGTCTGATATTACAAATGCATCTCTGGAACATATTGGAACTCACTTGAAGAACCTCTGTGATTTTCGCCTTGTGTTGCTTGACCATGAAGAGAAGATAACTGATTTGCCACTTGACAATGGGGTGAGGGCTCTACTGAGGGGCTGTGACAAGCTGAGGAGATTTGCTCTATATCTCAGGCGTGGCGGGTTGACTGATGTAGGCCTTGGTTACATTGGACAATACAGTCCAAATGTGAGATGGATGCTGCTTGGTTATGTGGGGGAGTCTGATGCAGGGCTTTTGGAGTTCGCTAAGGGGTGTCCTAGTCTTCAGAAACTTGAAATGAGAGGGTGTTTATTTTTCAGTGAACGTGCACTTGCTGTGGCTGCAACACAATTGACTTCTCTTAGGTACTTGTGGGTGCAAGGTTATGGTGTATCTCCATCTGGACGTGATCTTTTGGTAATGGCTCGACCCTTTTGGAACATTGAGTTGATTCCTTCTAGAAAGGTGGCTACGAATACCAATCCAGATGAGACTGTAGTTGTTGAGCATCCTGCTCATATTCTTGCATATTATTCTCTTGCAGGGCAGAGATCAGATTTTCCAGATACTGTTGTGCCTTTGGACACTGCCACATGCGTTGATACCTAG
Predicted protein sequences of Glyma18g03420
>Glyma18g03420.1   sequence type=predicted peptide   gene model=Glyma18g03420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTEERNVRKTRVVDVVLDCVIPYIDDPKDRDAVSQVCRRWYELDSLTRKHVTIALCYTTTPARLRRRFPHLESLKLKGKPRAAMFNLIPEDWGGHVTPWVKEISQYFDCLKSLHFRRMIVKDSDLQNLARDRGHVLHALKLDKCSGFTTDGLFHIGRFCKSLRVLFLEESSILEKDGEWLHELALNNTVLETLNFYLTDIAVVKIEDLELLAKNCPNLVSVKLTDCEILDLVNFFKHASALEEFCGGTYNEEPERYSAISLPAKLCRLGLTYIGKNELPIVFMFAAVLKKLDLLYAMLDTEDHCMLIQRCPNLEVLETRNVIGDRGLEVLGRCCKRLKRLRIERGDDDQGMEDEEGTVSHRGLIALSQGCSELEYMAVYVSDITNASLEHIGTHLKNLCDFRLVLLDHEEKITDLPLDNGVRALLRGCDKLRRFALYLRRGGLTDVGLGYIGQYSPNVRWMLLGYVGESDAGLLEFAKGCPSLQKLEMRGCLFFSERALAVAATQLTSLRYLWVQGYGVSPSGRDLLVMARPFWNIELIPSRKVATNTNPDETVVVEHPAHILAYYSLAGQRSDFPDTVVPLDTATCVDT*






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