SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G39940 | AT | Annotation by Michelle Graham. TAIR10: RNI-like superfamily protein | chr2:16672848-16675486 REVERSE LENGTH=592 | SoyBase | E_val: 0 | ISS |
| GO:0002237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin | SoyBase | N/A | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009625 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to insect | SoyBase | N/A | ISS |
| GO:0009641 | GO-bp | Annotation by Michelle Graham. GO Biological Process: shade avoidance | SoyBase | N/A | ISS |
| GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
| GO:0009861 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid and ethylene-dependent systemic resistance | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0010103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis | SoyBase | N/A | ISS |
| GO:0010118 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal movement | SoyBase | N/A | ISS |
| GO:0010218 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to far red light | SoyBase | N/A | ISS |
| GO:0031146 | GO-bp | Annotation by Michelle Graham. GO Biological Process: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0042752 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm | SoyBase | N/A | ISS |
| GO:0048443 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stamen development | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0019005 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: SCF ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG1947 | KOG | Leucine rich repeat proteins, some proteins contain F-box | JGI | ISS | |
| PTHR23125 | Panther | F-BOX/LEUCINE RICH REPEAT PROTEIN | JGI | ISS | |
| PTHR23125:SF128 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| UniRef100_Q45FY8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Coronatine-insensitive 1 n=1 Tax=Glycine max RepID=Q45FY8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0001CA999F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001CA999F related cluster n=1 Tax=unknown RepID=UPI0001CA999F | SoyBase | E_val: 0 | ISS |
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Glyma18g03420 not represented in the dataset |
Glyma18g03420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g34940 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g030200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g03420.1 sequence type=CDS gene model=Glyma18g03420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACGGAGGAACGGAACGTGCGGAAGACACGTGTGGTCGACGTGGTCCTCGACTGCGTCATCCCTTACATCGACGACCCCAAGGACCGCGACGCCGTTTCCCAGGTGTGTCGACGCTGGTACGAGCTCGACTCGCTCACCCGCAAGCACGTCACCATCGCGCTCTGCTACACCACCACCCCGGCTCGCCTCCGCCGCCGCTTCCCGCACCTCGAGTCGCTCAAGCTCAAGGGCAAGCCCCGAGCCGCAATGTTCAACTTGATACCCGAGGATTGGGGCGGACACGTCACTCCCTGGGTCAAAGAGATTTCTCAGTACTTCGATTGCCTCAAGAGCCTCCACTTCCGCCGCATGATTGTCAAGGATTCCGATCTTCAGAATCTCGCTCGTGACCGCGGTCACGTGCTTCACGCTCTCAAGCTTGACAAGTGCTCCGGTTTCACCACCGATGGTCTTTTCCATATCGGTCGCTTTTGCAAGAGTTTAAGAGTCTTGTTTTTGGAGGAAAGCTCAATTCTTGAGAAGGACGGAGAATGGCTACACGAGCTTGCTTTGAATAATACAGTTCTTGAGACTCTCAATTTTTACTTGACAGACATTGCTGTTGTGAAGATTGAGGACCTTGAACTTTTAGCTAAAAATTGCCCCAACTTAGTGTCTGTGAAACTTACTGACTGTGAAATACTGGATCTTGTGAACTTCTTTAAGCATGCCTCTGCGCTGGAAGAGTTTTGTGGAGGCACCTACAACGAGGAACCAGAAAGATACTCTGCTATATCATTACCAGCAAAGTTATGTCGATTGGGTTTAACATATATTGGAAAGAATGAGTTGCCCATTGTGTTCATGTTTGCAGCCGTACTAAAAAAATTGGATCTCCTCTATGCAATGCTAGACACGGAGGATCATTGTATGTTAATCCAAAGGTGTCCAAATCTGGAAGTCCTTGAGACAAGGAATGTAATTGGAGATAGAGGGTTAGAGGTTCTTGGTCGTTGTTGTAAGAGGCTAAAAAGGCTTAGGATTGAAAGGGGCGATGATGATCAAGGAATGGAGGATGAAGAAGGTACTGTGTCCCATAGAGGGCTAATAGCCTTGTCACAGGGCTGTTCAGAGCTTGAATACATGGCTGTTTATGTGTCTGATATTACAAATGCATCTCTGGAACATATTGGAACTCACTTGAAGAACCTCTGTGATTTTCGCCTTGTGTTGCTTGACCATGAAGAGAAGATAACTGATTTGCCACTTGACAATGGGGTGAGGGCTCTACTGAGGGGCTGTGACAAGCTGAGGAGATTTGCTCTATATCTCAGGCGTGGCGGGTTGACTGATGTAGGCCTTGGTTACATTGGACAATACAGTCCAAATGTGAGATGGATGCTGCTTGGTTATGTGGGGGAGTCTGATGCAGGGCTTTTGGAGTTCGCTAAGGGGTGTCCTAGTCTTCAGAAACTTGAAATGAGAGGGTGTTTATTTTTCAGTGAACGTGCACTTGCTGTGGCTGCAACACAATTGACTTCTCTTAGGTACTTGTGGGTGCAAGGTTATGGTGTATCTCCATCTGGACGTGATCTTTTGGTAATGGCTCGACCCTTTTGGAACATTGAGTTGATTCCTTCTAGAAAGGTGGCTACGAATACCAATCCAGATGAGACTGTAGTTGTTGAGCATCCTGCTCATATTCTTGCATATTATTCTCTTGCAGGGCAGAGATCAGATTTTCCAGATACTGTTGTGCCTTTGGACACTGCCACATGCGTTGATACCTAG
>Glyma18g03420.1 sequence type=predicted peptide gene model=Glyma18g03420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTEERNVRKTRVVDVVLDCVIPYIDDPKDRDAVSQVCRRWYELDSLTRKHVTIALCYTTTPARLRRRFPHLESLKLKGKPRAAMFNLIPEDWGGHVTPWVKEISQYFDCLKSLHFRRMIVKDSDLQNLARDRGHVLHALKLDKCSGFTTDGLFHIGRFCKSLRVLFLEESSILEKDGEWLHELALNNTVLETLNFYLTDIAVVKIEDLELLAKNCPNLVSVKLTDCEILDLVNFFKHASALEEFCGGTYNEEPERYSAISLPAKLCRLGLTYIGKNELPIVFMFAAVLKKLDLLYAMLDTEDHCMLIQRCPNLEVLETRNVIGDRGLEVLGRCCKRLKRLRIERGDDDQGMEDEEGTVSHRGLIALSQGCSELEYMAVYVSDITNASLEHIGTHLKNLCDFRLVLLDHEEKITDLPLDNGVRALLRGCDKLRRFALYLRRGGLTDVGLGYIGQYSPNVRWMLLGYVGESDAGLLEFAKGCPSLQKLEMRGCLFFSERALAVAATQLTSLRYLWVQGYGVSPSGRDLLVMARPFWNIELIPSRKVATNTNPDETVVVEHPAHILAYYSLAGQRSDFPDTVVPLDTATCVDT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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