SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G39990 | AT | Annotation by Michelle Graham. TAIR10: eukaryotic translation initiation factor 2 | chr2:16698332-16699929 REVERSE LENGTH=293 | SoyBase | E_val: 6.00E-159 | ISS |
| GO:0006413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational initiation | SoyBase | N/A | ISS |
| GO:0009790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development | SoyBase | N/A | ISS |
| GO:0009846 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen germination | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005852 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: eukaryotic translation initiation factor 3 complex | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003743 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity | SoyBase | N/A | ISS |
| KOG2975 | KOG | Translation initiation factor 3, subunit f (eIF-3f) | JGI | ISS | |
| PTHR10540 | Panther | EIF3F-RELATED | JGI | ISS | |
| PF01398 | PFAM | Mov34/MPN/PAD-1 family | JGI | ISS | |
| UniRef100_B7FK44 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 3 subunit F n=1 Tax=Medicago truncatula RepID=B7FK44_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_C6TC72 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TC72_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma18g03340 not represented in the dataset |
Glyma18g03340 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g35020 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g029500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g03340.1 sequence type=CDS gene model=Glyma18g03340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGCGAGCGATCGCACAGTGTTGCAATTCTCTTCATCATCTTCTTCTTCTTCGCAGATCTTGTCCGCGAAGGTCCACCCTCTGGTCATCTTCAACATCTGCGATTGCTATGTTCGACGCCCTGACCAAGCCGACCGCGTCATCGGAACCCTACTCGGCTCCGTCCTTCCCGACGGAACCGTCGATATCCGAAATTCCTATGCTGTTCCTCACAACGAGTCTATCGAACAGGTTGCATTGGATATAGAGTACCACCACAATATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTTTTATTCTCGAGAAGTGCCCAATCCCATACACTTGACTGTTGATACAGGATTTACAAATGGAGCGGGTACGATTAAAGCATACGTGTCTAACAATTTATCTCTTGGAGAACGTCAAATTGCTGCACAGTTTCAAGAAATTCCATTAGATCTTCGTATGGTGGAAGCTGAGCGAATTGGATTTGATATGCTGAAGGCAACTGCAGTTGACAAAATTCCCTCAGATTTAGAAGGGATGGAAGCATCAATGCAACATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTGGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGCTGTAGGTTCCCTTCCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCAGGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAGCTTGGCTGAAAAATTGAACACAGCTGCTCAGATTCTGTGA
>Glyma18g03340.1 sequence type=predicted peptide gene model=Glyma18g03340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAASDRTVLQFSSSSSSSSQILSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNESIEQVALDIEYHHNMLISHQKVNPKEIIVGWYSTGLGVTGGSALIHEFYSREVPNPIHLTVDTGFTNGAGTIKAYVSNNLSLGERQIAAQFQEIPLDLRMVEAERIGFDMLKATAVDKIPSDLEGMEASMQHLLVLIDDIYKYVDDVVEGRVAPDNKIGRFISEAVGSLPKLSPSVFDKLVNDSLQDHLLLLYLSSITRTQLSLAEKLNTAAQIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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