Glyma18g03250 - SoyBase

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Report for Sequence Feature Glyma18g03250

Feature Type:	gene_model
Chromosome:	Gm18
Start:	2162742
stop:	2168207
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g03250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G40070	AT	Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). \| chr2:16728378-16731160 REVERSE LENGTH=607	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010048	GO-bp	Annotation by Michelle Graham. GO Biological Process: vernalization response	SoyBase	N/A	ISS
GO:0043481	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light	SoyBase	N/A	ISS
GO:0048440	GO-bp	Annotation by Michelle Graham. GO Biological Process: carpel development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_B9SLM8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SLM8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MZ36	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MZ36_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g03250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g03250

Paralog	Evidence	Comments
Glyma11g35090	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g03250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g028700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g03250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g03250

Limit To All Plant Sequences

>Glyma18g03250.2   sequence type=transcript   gene model=Glyma18g03250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAGCCAATTTAGATAAACTTCTCAATTAGTCCTTACATGAGAAAAAAAAAAATATAATGAATCAAAGAGGCTTCTAACGCCTCCTGGTACTCCTCTTTTTCCTTCTTTGGAAATGGAAAGTCGAAAGACTGTTATGAGTCAGCTTGGTACTCCAACCACACGTCCTGTAGCATTAAAATCCAGGTTGGCAAATCATCAATCAGAGCCTGCTGGGAGGACTAATTTAGTATCTAAACAACCTACTTCCTCTCCTGGGTTGAGCTCTTCAAGTGGTGGGACTAGGAGGCCTTCATCATCAGGGGGTCCAGGATCACGACCTGCAACACCTACTGGACGTCCTACATTGACTACATCTTCAAAATCATCAAGACCTTCAACACCTACATTAACTGCAGCTTCGAAATCATCACGATCTGCAACTCCTACTAGGTCCATGGTAACATCCAAGACCACAACTTCCACAATCAAACCGGCAGTTTCTGCTACTAAGCATTTGGCTTCTGCCACTAAGACTCCGGTCCCTGCAACTAAACCAGCAATTCCATCAAGATCCTCTACACCTTTGTCAAGATCTGCTGCAAGATCTTCAACTCCAACTAGCAGGCCTACTTTACCTCCTTCCAGGCCCACATCAAGAGCAACTACTCCAACCCGGCGACCGTCTTTATCATCGAATGAACCCAGTATATATGCTTCTTCAGTTAAAGCTTCTTCAAGCCCCAAGCCAGCTTCTGTGACATCAAGGCAGCCAACTCCTGTGACAGTAAGAAAGCAAGCTCCTGTGAACTCAAGGCAGCCAGCATCACCATCACGTGGCACTTCACCAACAGTGAGATCAAGACCATGGAAGCCATCTGAGATGCCAGGTTTTTCACTTGATGCCCCACCTAATTTGAGAACAACATTACCTGACAGGCCACTGTCAGCAACTAGGGGCAGGCCTGGAGCACCCACTTCCCGGTCTTCATCTGTCGAGCCTTCTTCTAGTGGAAGACCCAGGCGACAATCATGCTCACCTTCAAGAGGACGGGCTTCCAATGGCAGTGTTCATATCAGTGGAAACTCTATGCCGGCAGTTAGCCGGGGGCACTCCAAAGTAAATGACAATGTCAGTCCCGTTGTAATGGGCACCAAAATGGTTGAGAGGGTAATAAATATGCGAAAACTAGTGCCTCCAATGATTGAAGACAAAAACTCTCCCCGTAGTAATCTGTCTGGCAAGTCAGCTTCATCTCCAGATAGCTCAGGTTTTGGAAGAACACTTTCAAAGAAGTCCTTGGATATGGCTATTAGGCATATGGATATACGGAGAACCATTCCTGGCAATTTACGGCCTTTGATGACAAATATTCCAGCATCTTCTTTGTATAGCGTGAGGTCTGGATCTCATCACGGCCGAACAATTAGTGTTTCAGGCTCTCCTCATGCCACAAGCAGTAATGCTAGTTCTGAACTGAGCGTAAACCAAAATGGCATTTGTTTAGATAGCAGTGAGGTAGATGATGATATTGGCAGTGAGAGATGTGGTCAATCCCCTGCCAGTGTACGGGGTAGGTAAAGTTTTCACACTTTGGGTAATTCTGCATATTTAAATAGCATCAACGTTCTTATCCTGGTTTCAGCCATAGCGGATTTGCTTATGGAGCTAACCTTGCTTGTACTAATGTAAAGCTTCTTGGAAGTGATGTAACCTCATGTAATGAGAAGGTACTCTGATTTTAAGTAGATGGGTTATATGTTGTAGCGGTAATGCTCATTTTTTGAAACAAACCGAGGTTTATCCTCCATTTATGAAAATTGAGCTTATTATCTGGAAACAATAAGCCAGATATTTATCCTATGTCAATGTAAATGCTTGACTAATTTGCCTAGATAGCATTTGGTATATAGG

Coding sequences of Glyma18g03250

Limit To All Plant Sequences

>Glyma18g03250.1   sequence type=CDS   gene model=Glyma18g03250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCGGAGTTTCAGGGCTCAGGAATCGCAAATGCTCGCTGCTTTAAAGCAGAGGGAGCAGCAATTTGGGGGTTTGAGGGCTTCCGTGATGAAGGAGAAGGAGGAGGAACTCGCATTGTTTCTGGAGATGAAGAAGCGCGAGAAAGAGCGCAATGACCTTCTTCTTAACAGCTCCGAGGAGTTCGATGCACCTCTCGGGTCAAATGGGGGTGCTAATCCCATTTTTAACATTTCGTCTTCTACGCCGGCTCCTGTACGGAAGACTGGCGTTGATGATTTTCTCAATTCAGAAAATGATAAGAATGACTATGACTGGCTTCTAACGCCTCCTGGTACTCCTCTTTTTCCTTCTTTGGAAATGGAAAGTCGAAAGACTGTTATGAGTCAGCTTGGTACTCCAACCACACGTCCTGTAGCATTAAAATCCAGGTTGGCAAATCATCAATCAGAGCCTGCTGGGAGGACTAATTTAGTATCTAAACAACCTACTTCCTCTCCTGGGTTGAGCTCTTCAAGTGGTGGGACTAGGAGGCCTTCATCATCAGGGGGTCCAGGATCACGACCTGCAACACCTACTGGACGTCCTACATTGACTACATCTTCAAAATCATCAAGACCTTCAACACCTACATTAACTGCAGCTTCGAAATCATCACGATCTGCAACTCCTACTAGGTCCATGGTAACATCCAAGACCACAACTTCCACAATCAAACCGGCAGTTTCTGCTACTAAGCATTTGGCTTCTGCCACTAAGACTCCGGTCCCTGCAACTAAACCAGCAATTCCATCAAGATCCTCTACACCTTTGTCAAGATCTGCTGCAAGATCTTCAACTCCAACTAGCAGGCCTACTTTACCTCCTTCCAGGCCCACATCAAGAGCAACTACTCCAACCCGGCGACCGTCTTTATCATCGAATGAACCCAGTATATATGCTTCTTCAGTTAAAGCTTCTTCAAGCCCCAAGCCAGCTTCTGTGACATCAAGGCAGCCAACTCCTGTGACAGTAAGAAAGCAAGCTCCTGTGAACTCAAGGCAGCCAGCATCACCATCACGTGGCACTTCACCAACAGTGAGATCAAGACCATGGAAGCCATCTGAGATGCCAGGTTTTTCACTTGATGCCCCACCTAATTTGAGAACAACATTACCTGACAGGCCACTGTCAGCAACTAGGGGCAGGCCTGGAGCACCCACTTCCCGGTCTTCATCTGTCGAGCCTTCTTCTAGTGGAAGACCCAGGCGACAATCATGCTCACCTTCAAGAGGACGGGCTTCCAATGGCAGTGTTCATATCAGTGGAAACTCTATGCCGGCAGTTAGCCGGGGGCACTCCAAAGTAAATGACAATGTCAGTCCCGTTGTAATGGGCACCAAAATGGTTGAGAGGGTAATAAATATGCGAAAACTAGTGCCTCCAATGATTGAAGACAAAAACTCTCCCCGTAGTAATCTGTCTGGCAAGTCAGCTTCATCTCCAGATAGCTCAGGTTTTGGAAGAACACTTTCAAAGAAGTCCTTGGATATGGCTATTAGGCATATGGATATACGGAGAACCATTCCTGGCAATTTACGGCCTTTGATGACAAATATTCCAGCATCTTCTTTGTATAGCGTGAGGTCTGGATCTCATCACGGCCGAACAATTAGTGTTTCAGGCTCTCCTCATGCCACAAGCAGTAATGCTAGTTCTGAACTGAGCGTAAACCAAAATGGCATTTGTTTAGATAGCAGTGAGGTAGATGATGATATTGGCAGTGAGAGATGTGGTCAATCCCCTGCCAGTGTACGGGGTAGGTAA

>Glyma18g03250.2   sequence type=CDS   gene model=Glyma18g03250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGTCGAAAGACTGTTATGAGTCAGCTTGGTACTCCAACCACACGTCCTGTAGCATTAAAATCCAGGTTGGCAAATCATCAATCAGAGCCTGCTGGGAGGACTAATTTAGTATCTAAACAACCTACTTCCTCTCCTGGGTTGAGCTCTTCAAGTGGTGGGACTAGGAGGCCTTCATCATCAGGGGGTCCAGGATCACGACCTGCAACACCTACTGGACGTCCTACATTGACTACATCTTCAAAATCATCAAGACCTTCAACACCTACATTAACTGCAGCTTCGAAATCATCACGATCTGCAACTCCTACTAGGTCCATGGTAACATCCAAGACCACAACTTCCACAATCAAACCGGCAGTTTCTGCTACTAAGCATTTGGCTTCTGCCACTAAGACTCCGGTCCCTGCAACTAAACCAGCAATTCCATCAAGATCCTCTACACCTTTGTCAAGATCTGCTGCAAGATCTTCAACTCCAACTAGCAGGCCTACTTTACCTCCTTCCAGGCCCACATCAAGAGCAACTACTCCAACCCGGCGACCGTCTTTATCATCGAATGAACCCAGTATATATGCTTCTTCAGTTAAAGCTTCTTCAAGCCCCAAGCCAGCTTCTGTGACATCAAGGCAGCCAACTCCTGTGACAGTAAGAAAGCAAGCTCCTGTGAACTCAAGGCAGCCAGCATCACCATCACGTGGCACTTCACCAACAGTGAGATCAAGACCATGGAAGCCATCTGAGATGCCAGGTTTTTCACTTGATGCCCCACCTAATTTGAGAACAACATTACCTGACAGGCCACTGTCAGCAACTAGGGGCAGGCCTGGAGCACCCACTTCCCGGTCTTCATCTGTCGAGCCTTCTTCTAGTGGAAGACCCAGGCGACAATCATGCTCACCTTCAAGAGGACGGGCTTCCAATGGCAGTGTTCATATCAGTGGAAACTCTATGCCGGCAGTTAGCCGGGGGCACTCCAAAGTAAATGACAATGTCAGTCCCGTTGTAATGGGCACCAAAATGGTTGAGAGGGTAATAAATATGCGAAAACTAGTGCCTCCAATGATTGAAGACAAAAACTCTCCCCGTAGTAATCTGTCTGGCAAGTCAGCTTCATCTCCAGATAGCTCAGGTTTTGGAAGAACACTTTCAAAGAAGTCCTTGGATATGGCTATTAGGCATATGGATATACGGAGAACCATTCCTGGCAATTTACGGCCTTTGATGACAAATATTCCAGCATCTTCTTTGTATAGCGTGAGGTCTGGATCTCATCACGGCCGAACAATTAGTGTTTCAGGCTCTCCTCATGCCACAAGCAGTAATGCTAGTTCTGAACTGAGCGTAAACCAAAATGGCATTTGTTTAGATAGCAGTGAGGTAGATGATGATATTGGCAGTGAGAGATGTGGTCAATCCCCTGCCAGTGTACGGGGTAGGTAA

Predicted protein sequences of Glyma18g03250

Limit To All Plant Sequences

>Glyma18g03250.1   sequence type=predicted peptide   gene model=Glyma18g03250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNRSFRAQESQMLAALKQREQQFGGLRASVMKEKEEELALFLEMKKREKERNDLLLNSSEEFDAPLGSNGGANPIFNISSSTPAPVRKTGVDDFLNSENDKNDYDWLLTPPGTPLFPSLEMESRKTVMSQLGTPTTRPVALKSRLANHQSEPAGRTNLVSKQPTSSPGLSSSSGGTRRPSSSGGPGSRPATPTGRPTLTTSSKSSRPSTPTLTAASKSSRSATPTRSMVTSKTTTSTIKPAVSATKHLASATKTPVPATKPAIPSRSSTPLSRSAARSSTPTSRPTLPPSRPTSRATTPTRRPSLSSNEPSIYASSVKASSSPKPASVTSRQPTPVTVRKQAPVNSRQPASPSRGTSPTVRSRPWKPSEMPGFSLDAPPNLRTTLPDRPLSATRGRPGAPTSRSSSVEPSSSGRPRRQSCSPSRGRASNGSVHISGNSMPAVSRGHSKVNDNVSPVVMGTKMVERVINMRKLVPPMIEDKNSPRSNLSGKSASSPDSSGFGRTLSKKSLDMAIRHMDIRRTIPGNLRPLMTNIPASSLYSVRSGSHHGRTISVSGSPHATSSNASSELSVNQNGICLDSSEVDDDIGSERCGQSPASVRGR*

>Glyma18g03250.2   sequence type=predicted peptide   gene model=Glyma18g03250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESRKTVMSQLGTPTTRPVALKSRLANHQSEPAGRTNLVSKQPTSSPGLSSSSGGTRRPSSSGGPGSRPATPTGRPTLTTSSKSSRPSTPTLTAASKSSRSATPTRSMVTSKTTTSTIKPAVSATKHLASATKTPVPATKPAIPSRSSTPLSRSAARSSTPTSRPTLPPSRPTSRATTPTRRPSLSSNEPSIYASSVKASSSPKPASVTSRQPTPVTVRKQAPVNSRQPASPSRGTSPTVRSRPWKPSEMPGFSLDAPPNLRTTLPDRPLSATRGRPGAPTSRSSSVEPSSSGRPRRQSCSPSRGRASNGSVHISGNSMPAVSRGHSKVNDNVSPVVMGTKMVERVINMRKLVPPMIEDKNSPRSNLSGKSASSPDSSGFGRTLSKKSLDMAIRHMDIRRTIPGNLRPLMTNIPASSLYSVRSGSHHGRTISVSGSPHATSSNASSELSVNQNGICLDSSEVDDDIGSERCGQSPASVRGR*

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