Report for Sequence Feature Glyma18g03240
Feature Type: gene_model
Chromosome: Gm18
Start: 2154159
stop: 2159546
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g03240
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G05700 AT
Annotation by Michelle Graham. TAIR10: arginine-tRNA protein transferase 1 | chr5:1712950-1715639 REVERSE LENGTH=632
SoyBase E_val: 0 ISS
GO:0006816 GO-bp
Annotation by Michelle Graham. GO Biological Process: calcium ion transport
SoyBase N/A ISS
GO:0009737 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus
SoyBase N/A ISS
GO:0010029 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of seed germination
SoyBase N/A ISS
GO:0010150 GO-bp
Annotation by Michelle Graham. GO Biological Process: leaf senescence
SoyBase N/A ISS
GO:0016598 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein arginylation
SoyBase N/A ISS
GO:0019243 GO-bp
Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate
SoyBase N/A ISS
GO:0050994 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of lipid catabolic process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0004057 GO-mf
Annotation by Michelle Graham. GO Molecular Function: arginyltransferase activity
SoyBase N/A ISS
KOG1193
KOG
Arginyl-tRNA-protein transferase
JGI ISS
PTHR21367 Panther
ARGININE-TRNA-PROTEIN TRANSFERASE 1
JGI ISS
PF04376 PFAM
Arginine-tRNA-protein transferase, N terminus
JGI ISS
PF04377 PFAM
Arginine-tRNA-protein transferase, C terminus
JGI ISS
UniRef100_I1MZ35 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Arginyl-tRNA--protein transferase 1 n=1 Tax=Glycine max RepID=I1MZ35_SOYBN
SoyBase E_val: 0 ISS
UniRef100_UPI000233E57F UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233E57F related cluster n=1 Tax=unknown RepID=UPI000233E57F
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g03240
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g03240
Paralog Evidence Comments
Glyma11g35100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g03240 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g028600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g03240
Coding sequences of Glyma18g03240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g03240.1 sequence type=CDS gene model=Glyma18g03240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGAGTAGCAGCAGCAACACTCCGAAGGAAAGCGTTGTTGTCGACTGCGGAAGGCGTCGAACCTCTTGCGGCTATTGCAGATCCTCTCGTCACAATAGCATCTCTCATGGCATGTGGGCACATAGCCTTACTGTGGATGACTACCAAGATCTTCTTGATCGTGGCTGGAGAAGGTCTGGATGTTTTCTTTATAAACCAGAGATGGAAAGGACATGCTGCCCTTCTTATACAATTCGCTTGAAAGCAAGTGACTTTGTTCCTTCTAAGGAGCAACTTCGTGTATCTAGACGAATGCAAAGGTTTTTAGATGGAACCTTGGATGTAAAAAAAGTTGATGTTATGGAGGACCCAACCAAATCGGGAATCTTCACTAGACCTATGTCAGAAGAATCCTTAGCTGCTGGCAGTGAAAACAAGGATGAAGTTGAAAAATCTTTGCATTATTTATCAAACCAAATTGATAATGTTATACACATCCTCATTGAGAAGGGGGAATTTCCCTCTGGTATTCAATTACCAAATGCTTCAGTAAAAAGAGTTTCACAGGGAAAAAGAAAGTTACTAGTCAATGGATCAGAAGATCTCTTATATAGTAGCAATATAGCCTTTCAAATTGCAGCATCTATAAAACGAGCACAATCATGTGACAAGGTTGTCGATGATTCCAAACCAGCAAGAGTCTGTGAAAAGGAGAATGATTCATCTCCTAAAATTATTGCAGAAAAGCTAGTAGCTTCTTTAGATCCAACTGTGAAAAATTCTGATTTGTCTATCAGGGCTTGCAATGGACATATCAATTTTTATGCTTCTAGTAAGCAAGTGTCCCTGAACAGAAGTGTTCAAAATGCTCCAGTTCCTAAAATTTCTAGAATGAAGCATGACAGTGGAGGAAATTGTTTGATTGGTCAGGTAAAAAGGCAAAAGCTTGAGATCCGTTTAAACAGATCCAGTTTTGATCCAGAAGAATTTGCTTTGTACAGAAGATATCAGCTCAAAGTACATAATGATAAACCACAAAATGTCACAGAGAACTCATATCGTAGGTTTTTGGTTGATACTCCATTAATACAAGTTTCTCCCACTGGTGATAGCACAGTTCCTCCTTGTGGTTTTGGCTCTTTCCATCAACAATATCTAATAGACGGCCAGTTAGTGGCAGTTGGTGTTATAGATATCCTTCCTAAATGTTTGTCAAGTAAATATTTGTTCTGGGATCCAGACTTTGCCTTTCTATCACTAGGCAAGTACTCGGCTTTTCAAGAAATAGGTTGGGTGAAAGAAAACCAGGTTTATTGTCCTAGTCTACAATACTATTATCTTGGCTACTATATTCACTCTTGCAGCAAGATGAGATACAAAGCTGCATATCGTCCTTCAGAGCTTTTATGCCCTCTTCGCTATCAGTGGGTTCCATTTGACATTGCAAGGCCTCTGCTTGACAGAAAACCTTATGTTGTCTTATCAGATTCTTCCATTTTACAAAATGGAGAGTCATCCCTACCTCAAACTACGGAAGATGTAATGAGAAGGGGTTTTGATGATGTTGGCCAAGAAGATGCAAATGATGTTCCAATGCTTGATGATGAAGAAATGGTTGAGTCTGAATCAGAATGCTCTGATGATGAACCTGACCTAGAAACCACTTCAGATGATGATCCAGAAATTGCTGATGTCAGCAAGGTTTTGCTAGGGATAAAGGGATCTCATGTGAAATACAAGGATCTGCGGGTTGTCTTTGGTCCTGAGCAGCAGAGTTACTTGGAGTCACAATTGCGGAGATACAGGAAGGTTGTGGGTCCATTGCTATCCGAGCGAATCGTCTATTCGCTCGGATAA
Predicted protein sequences of Glyma18g03240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g03240.1 sequence type=predicted peptide gene model=Glyma18g03240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASSSSNTPKESVVVDCGRRRTSCGYCRSSRHNSISHGMWAHSLTVDDYQDLLDRGWRRSGCFLYKPEMERTCCPSYTIRLKASDFVPSKEQLRVSRRMQRFLDGTLDVKKVDVMEDPTKSGIFTRPMSEESLAAGSENKDEVEKSLHYLSNQIDNVIHILIEKGEFPSGIQLPNASVKRVSQGKRKLLVNGSEDLLYSSNIAFQIAASIKRAQSCDKVVDDSKPARVCEKENDSSPKIIAEKLVASLDPTVKNSDLSIRACNGHINFYASSKQVSLNRSVQNAPVPKISRMKHDSGGNCLIGQVKRQKLEIRLNRSSFDPEEFALYRRYQLKVHNDKPQNVTENSYRRFLVDTPLIQVSPTGDSTVPPCGFGSFHQQYLIDGQLVAVGVIDILPKCLSSKYLFWDPDFAFLSLGKYSAFQEIGWVKENQVYCPSLQYYYLGYYIHSCSKMRYKAAYRPSELLCPLRYQWVPFDIARPLLDRKPYVVLSDSSILQNGESSLPQTTEDVMRRGFDDVGQEDANDVPMLDDEEMVESESECSDDEPDLETTSDDDPEIADVSKVLLGIKGSHVKYKDLRVVFGPEQQSYLESQLRRYRKVVGPLLSERIVYSLG*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
