Glyma18g03231 - SoyBase

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Report for Sequence Feature Glyma18g03231

Feature Type:	gene_model
Chromosome:	Gm18
Start:	2148250
stop:	2152006
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g03231

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G40110	AT	Annotation by Michelle Graham. TAIR10: Yippee family putative zinc-binding protein \| chr2:16748159-16749357 FORWARD LENGTH=130	SoyBase	E_val: 7.00E-78	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3399	KOG	Predicted Yippee-type zinc-binding protein	JGI		ISS
PTHR13847	Panther	FAD NAD BINDING OXIDOREDUCTASES	JGI		ISS
PTHR13847:SF40	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF03226	PFAM	Yippee putative zinc-binding protein	JGI		ISS
UniRef100_C6SVL4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SVL4_SOYBN	SoyBase	E_val: 2.00E-91	ISS
UniRef100_G7JB73	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein yippee-like protein n=2 Tax=Medicago truncatula RepID=G7JB73_MEDTR	SoyBase	E_val: 9.00E-78	ISS

Expression Patterns of Glyma18g03231

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g03231 not represented in the dataset	Glyma18g03231 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g03231

Paralog	Evidence	Comments
Glyma11g35110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g03231 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g028500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g03231

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g03231

Limit To All Plant Sequences

>Glyma18g03231.2   sequence type=transcript   gene model=Glyma18g03231   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGATGATTGATGACAAACCACAATTTTTTTTGCAACTACATTATAGCAATTCACACAACACAACACAGGCAAATAATCTTCAACCATTCTTCTTTTTCTTTCTTCTTTATCTCAATTGTTTGTGGTTACTGTGCAGATTAATGGGGAGGTTGTTTGTGGTGAATCTGGAAGGGAAGATCTATAGCTGCAAACACTGCCATACCCATCTTGCGCTTTACGATGACATCTACTCCAGGACATTCCATTGCAGACATGGGAAAGCTTATCTCTTCAATAAGGTTGTGAATGTTTCTATTGGCGAAATGGAGGACAGACCGATGATGACTGGGTTACATACCGTGGCTGACATTTTCTGTGTGGGTTGTGGATCAATCGTGGGTTGGAAATATGAGACTGCCTATGAAAAAAACCAGAAGTACAAGGAAGGAAAATCAGTGCTTGAACGGTACAAAGTGTCAGGTCCTGATGGAAGCAATTATTGGATCAGCAATGAGGCACATGTTGGTGGAAGTGATGCAGATGATGCTTAGTCATCCTACCATTCCCAATTGTACATTCCTTAACCCTGTGTTGTTCAATGAATGTGGGTTTATATAGGAAATTTATCAAAAACAACGTAGTTGAACATATTGCCAAACCCTGTCAATAACGTATTTAAGTACATCTAAATTTTTATCCT

>Glyma18g03231.3   sequence type=transcript   gene model=Glyma18g03231   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGAGTGCAGTGTCATACCTTCACACAAAGGCAACAAAATATGAAAATACAAACATTAAAAACACAATAAATAAATACATCTACAACAGCTTACTTTTCAGACCACAATTTTTTTTGCAACTACATTATAGCAATTCACACAACACAACACAGATTAATGGGGAGGTTGTTTGTGGTGAATCTGGAAGGGAAGATCTATAGCTGCAAACACTGCCATACCCATCTTGCGCTTTACGATGACATCTACTCCAGGACATTCCATTGCAGACATGGGAAAGCTTATCTCTTCAATAAGGTTGTGAATGTTTCTATTGGCGAAATGGAGGACAGACCGATGATGACTGGGTTACATACCGTGGCTGACATTTTCTGTGTGGGTTGTGGATCAATCGTGGGTTGGAAATATGAGACTGCCTATGAAAAAAACCAGAAGTACAAGGAAGGAAAATCAGTGCTTGAACGGTACAAAGTGTCAGGTCCTGATGGAAGCAATTATTGGATCAGCAATGAGGCACATGTTGGTGGAAGTGATGCAGATGATGCTTAGTCATCCTACCATTCCCAATTAACCGTATTTGGATGAAGAAAGCCTTTCAAGTGCCCTGTCTCTGACTCTCTCTCACTCTCTTAAATGGAATGTATTGAAATAAAAGACTGCTGAAAAAAATGTATTATAACCAAAACTTTGTTGGTTGAATTTACTCTAGTTTCTTCAAATGGATTTTCATCAATTCTGTTGTCAAATACAATATTGCTTGAATGTATACTGACATAACCGGATTGATATCCACATATTGGCATTCGTGTCGTAGTGCATGAGTGGTTGAGTGGGATATACTAAAAGGACAAAACTTATACAATATACTTTAGGTACTTGTTGTGATTAGGTAAAATTTCATCTTATTAGGTTATTAGGTAAAATTCTTATTTTGATTGGAAAACATGACAAAGTACATAAGATAATGCCATTAAAGTCAATATAATGGGCTGGAAAGTAATTCTTCCTATTTTTGAATAGCT

>Glyma18g03231.4   sequence type=transcript   gene model=Glyma18g03231   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGAGTGCAGTGTCATACCTTCACACAAAGGCAACAAAATATGAAAATACAAACATTAAAAACACAATAAATAAATACATCTACAACAGCTTACTTTTCAGACCACAATTTTTTTTGCAACTACATTATAGCAATTCACACAACACAACACAGATTAATGGGGAGGTTGTTTGTGGTGAATCTGGAAGGGAAGATCTATAGCTGCAAACACTGCCATACCCATCTTGCGCTTTACGATGACATCTACTCCAGGACATTCCATTGCAGACATGGGAAAGCTTATCTCTTCAATAAGGTTGTGAATGTTTCTATTGGCGAAATGGAGGACAGACCGATGATGACTGGGTTACATACCGTGGCTGACATTTTCTGTGTGGGTTGTGGATCAATCGTGGGTTGGAAATATGAGACTGCCTATGAAAAAAACCAGAAGTACAAGGAAGGAAAATCAGTGCTTGAACGGTACAAAGTGTCAGGTCCTGATGGAAGCAATTATTGGATCAGCAATGAGGCACATGTTGGTGGAAGTGATGCAGATGATGCTTAGTCATCCTACCATTCCCAATTGTACATTCCTTAACCCTGTGTTGTTCAATGAATGTGGGTTTATATAGGAAATTTATCAAAAACAACGTAGTTGAACATATTGCCAAACCCTGTCAATAACGTATTTAAGTACATCTAAATTTTTATCCTAATGTTTTCTTTTAAAGAAAAAAACTTATTCAAACTTCTAATTTGTCCTGTTTTTCAATTTGTAGAACCGTATTTGGATGAAGAAAGCCTTTCAAGTGCCCTGTCTCTGACTCTCTCTCACTCTCTTAAATGGAATGTATTGAAATAAAAGACTGCTGAAAAAAATGTATTATAACCAAAACTTTGTTGGTTGAATTTACTCTAGTTTCTTCAAATGGATTTTCATCAATTCTGTTGTCAAATACAATATTGCTTGAATGTATACTGACATAACCGGATTGATATCCACATATTGGCATTCGTGTCGTAGTGCATGAGTGGTTGAGTGGGATATACTAAAAGGACAAAACTTATACAATATACTTTAGGTACTTGTTGTGATTAGGTAAAATTTCATCTTATTAGGTTATTAGGTAAAATTCTTATTTTGATTGGAAAACATGACAAAGTACATAAGATAATGCCATTAAAGTCAATATAATGGGCTGGAAAGTAATTCTTCCTATTTTTGAATAGCT

Coding sequences of Glyma18g03231

Limit To All Plant Sequences

>Glyma18g03231.1   sequence type=CDS   gene model=Glyma18g03231   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGATGATTGATGACAAACCACAATTTTTTTTGCAACTACATTATAGCAATTCACACAACACAACACAGGCAAATAATCTTCAACCATTCTTCTTTTTCTTTCTTCTTTATCTCAATTGTTTGTGGTTACTGTGCAGATTAATGGGGAGGTTGTTTGTGGTGAATCTGGAAGGGAAGATCTATAGCTGCAAACACTGCCATACCCATCTTGCGCTTTACGATGACATCTACTCCAGGACATTCCATTGCAGACATGGGAAAGCTTATCTCTTCAATAAGGTTGTGAATGTTTCTATTGGCGAAATGGAGGACAGACCGATGATGACTGGGTTACATACCGTGGCTGACATTTTCTGTGTGGGTTGTGGATCAATCGTGGGTTGGAAATATGAGACTGCCTATGAAAAAAACCAGAAGTACAAGGAAGGAAAATCAGTGCTTGAACGGTACAAAGTGTCAGGTCCTGATGGAAGCAATTATTGGATCAGCAATGAGGCACATGTTGGTGGAAGTGATGCAGATGATGCTTAG

>Glyma18g03231.2   sequence type=CDS   gene model=Glyma18g03231   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGATGATTGATGACAAACCACAATTTTTTTTGCAACTACATTATAGCAATTCACACAACACAACACAGGCAAATAATCTTCAACCATTCTTCTTTTTCTTTCTTCTTTATCTCAATTGTTTGTGGTTACTGTGCAGATTAATGGGGAGGTTGTTTGTGGTGAATCTGGAAGGGAAGATCTATAGCTGCAAACACTGCCATACCCATCTTGCGCTTTACGATGACATCTACTCCAGGACATTCCATTGCAGACATGGGAAAGCTTATCTCTTCAATAAGGTTGTGAATGTTTCTATTGGCGAAATGGAGGACAGACCGATGATGACTGGGTTACATACCGTGGCTGACATTTTCTGTGTGGGTTGTGGATCAATCGTGGGTTGGAAATATGAGACTGCCTATGAAAAAAACCAGAAGTACAAGGAAGGAAAATCAGTGCTTGAACGGTACAAAGTGTCAGGTCCTGATGGAAGCAATTATTGGATCAGCAATGAGGCACATGTTGGTGGAAGTGATGCAGATGATGCTTAG

>Glyma18g03231.3   sequence type=CDS   gene model=Glyma18g03231   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGGTTGTTTGTGGTGAATCTGGAAGGGAAGATCTATAGCTGCAAACACTGCCATACCCATCTTGCGCTTTACGATGACATCTACTCCAGGACATTCCATTGCAGACATGGGAAAGCTTATCTCTTCAATAAGGTTGTGAATGTTTCTATTGGCGAAATGGAGGACAGACCGATGATGACTGGGTTACATACCGTGGCTGACATTTTCTGTGTGGGTTGTGGATCAATCGTGGGTTGGAAATATGAGACTGCCTATGAAAAAAACCAGAAGTACAAGGAAGGAAAATCAGTGCTTGAACGGTACAAAGTGTCAGGTCCTGATGGAAGCAATTATTGGATCAGCAATGAGGCACATGTTGGTGGAAGTGATGCAGATGATGCTTAG

>Glyma18g03231.4   sequence type=CDS   gene model=Glyma18g03231   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGGTTGTTTGTGGTGAATCTGGAAGGGAAGATCTATAGCTGCAAACACTGCCATACCCATCTTGCGCTTTACGATGACATCTACTCCAGGACATTCCATTGCAGACATGGGAAAGCTTATCTCTTCAATAAGGTTGTGAATGTTTCTATTGGCGAAATGGAGGACAGACCGATGATGACTGGGTTACATACCGTGGCTGACATTTTCTGTGTGGGTTGTGGATCAATCGTGGGTTGGAAATATGAGACTGCCTATGAAAAAAACCAGAAGTACAAGGAAGGAAAATCAGTGCTTGAACGGTACAAAGTGTCAGGTCCTGATGGAAGCAATTATTGGATCAGCAATGAGGCACATGTTGGTGGAAGTGATGCAGATGATGCTTAG

Predicted protein sequences of Glyma18g03231

Limit To All Plant Sequences

>Glyma18g03231.1   sequence type=predicted peptide   gene model=Glyma18g03231   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLMIDDKPQFFLQLHYSNSHNTTQANNLQPFFFFFLLYLNCLWLLCRLMGRLFVVNLEGKIYSCKHCHTHLALYDDIYSRTFHCRHGKAYLFNKVVNVSIGEMEDRPMMTGLHTVADIFCVGCGSIVGWKYETAYEKNQKYKEGKSVLERYKVSGPDGSNYWISNEAHVGGSDADDA*

>Glyma18g03231.2   sequence type=predicted peptide   gene model=Glyma18g03231   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLMIDDKPQFFLQLHYSNSHNTTQANNLQPFFFFFLLYLNCLWLLCRLMGRLFVVNLEGKIYSCKHCHTHLALYDDIYSRTFHCRHGKAYLFNKVVNVSIGEMEDRPMMTGLHTVADIFCVGCGSIVGWKYETAYEKNQKYKEGKSVLERYKVSGPDGSNYWISNEAHVGGSDADDA*

>Glyma18g03231.3   sequence type=predicted peptide   gene model=Glyma18g03231   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRLFVVNLEGKIYSCKHCHTHLALYDDIYSRTFHCRHGKAYLFNKVVNVSIGEMEDRPMMTGLHTVADIFCVGCGSIVGWKYETAYEKNQKYKEGKSVLERYKVSGPDGSNYWISNEAHVGGSDADDA*

>Glyma18g03231.4   sequence type=predicted peptide   gene model=Glyma18g03231   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRLFVVNLEGKIYSCKHCHTHLALYDDIYSRTFHCRHGKAYLFNKVVNVSIGEMEDRPMMTGLHTVADIFCVGCGSIVGWKYETAYEKNQKYKEGKSVLERYKVSGPDGSNYWISNEAHVGGSDADDA*

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