Glyma18g03220 - SoyBase

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Report for Sequence Feature Glyma18g03220

Feature Type:	gene_model
Chromosome:	Gm18
Start:	2142217
stop:	2145180
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g03220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G40100	AT	Annotation by Michelle Graham. TAIR10: light harvesting complex photosystem II \| chr2:16745884-16747190 FORWARD LENGTH=276	SoyBase	E_val: 2.00E-140	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0009637	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to blue light	SoyBase	N/A	ISS
GO:0009765	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light harvesting	SoyBase	N/A	ISS
GO:0010114	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red light	SoyBase	N/A	ISS
GO:0010218	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to far red light	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0030076	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: light-harvesting complex	SoyBase	N/A	ISS
GO:0016168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chlorophyll binding	SoyBase	N/A	ISS
PTHR21649	Panther	CHLOROPHYLL A/B BINDING PROTEIN	JGI		ISS
PF00504	PFAM	Chlorophyll A-B binding protein	JGI		ISS
UniRef100_G7JB75	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chlorophyll a-b binding protein CP29.3 n=1 Tax=Medicago truncatula RepID=G7JB75_MEDTR	SoyBase	E_val: 2.00E-150	ISS
UniRef100_I1MZ32	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MZ32_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g03220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g03220

Paralog	Evidence	Comments
Glyma11g35130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g03220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g028400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g03220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g03220

Limit To All Plant Sequences

>Glyma18g03220.4   sequence type=transcript   gene model=Glyma18g03220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGATAAGCCACATTTTATGCTCACACACTCACTCCACACTCCATCCATCACAAAACTTTCCCCCACACTAAAAACAAATTTATATATATACATCCCTTTCCCACACTTTTTCCACCCTCAAACACGTAACTACTATTTCGAACTCCGCCATGGCTGCCACCACCGCCACCGCCACGTCATACTTTTTTGGCACCCGCCTCAACAACCCGACAACCTTAAACAACGGAAGATTCCACGCGCTCCTCAACTTCGGCAAAAAGAAGGCGGCGGCGCCGCCACCGAAGAAAAAGGAAGTGAAAGTGAAACCCTCCGGCGACCGGCTGGTGTGGTTTCCTAATGCGGAGCCGCCGGAGTGGCTCGACGGAAGCATGATCGGCGACCGCGGGTTCGACCCGTTCGGTTTCGCGAAGCCCGCGGAGTACCTGCAGTTCGACCTGGACTCGCTGGACCAGAACCTCGCGAAGAACGTCGCCGGCGATGTGATCGGAACCAGGGTGGAGGTCGCCGACGTTAAACCAACGCCGTTTCAGCCCTACTCGGAGGTTTTCGGGATTCAGAGGTTCCGCGAGTGCGAACTCATTCATGGAAGGTGGGCAATGCTGGGTGCTCTCGGTGCTTTGGTCGTTGAGGCTCTCACCGGAGTCGCGTGGCAAGACGCCGGAAAGGTAGAGCTGGTGGAAGGATCATCTTACCTGGGGCTTCCTCTTCCATTTTCATTGACCACACTGATCTGGATTGAGGTGATAGTGATAGGGTACATAGAATTTCAAAGAAATGCAGAACTTGACCCAGAGAAAAGGTTGTACCCAGGTGGCAGGTTCTTTGATCCTCTGGGTTTGGCCAACGACCCTGAAGAAAAGGCCAGACTTCAACTTGCTGAGATCAAGCATTCTCGCTTAGCCATGGTGGTCTTCCTCATCTTTGCAATTCAAGCTGCTGTAACAGGAAAAGGCCCTATCAGTTTTCTTGCTACCTTCAACAAGTGACATCATATCATATAATATATAACTTTATAAATGAAAACTTCCCACCGTATTCTCATTCTCCTCTATTAAGTTACTCACCTCCTCATCTAATTTTATTAATTCTTTTCTGTACACCCAAAAGATGAAAACTGCTACTTATAATTATGTATGTATGTTTGTACTCTGTTGTATGCTTCTGTATGATATTCAGTATTGGTACTTTGATGAAACCTATGCTTCTTAAAAATAACTTTGGAATAAGAAGAGTGCTAGTAAGATTTTTTTTAATACGTT

Coding sequences of Glyma18g03220

Limit To All Plant Sequences

>Glyma18g03220.3   sequence type=CDS   gene model=Glyma18g03220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCACCACCGCCACCGCCACGTCATACTTTTTTGGCACCCGCCTCAACAACCCGACAACCTTAAACAACGGAAGATTCCACGCGCTCCTCAACTTCGGCAAAAAGAAGGCGGCGGCGCCGCCACCGAAGAAAAAGGAAGTGAAAGTGAAACCCTCCGGCGACCGGCTGGTGTGGTTTCCTAATGCGGAGCCGCCGGAGTGGCTCGACGGAAGCATGATCGGCGACCGCGGGTTCGACCCGTTCGGTTTCGCGAAGCCCGCGGAGTACCTGCAGTTCGACCTGGACTCGCTGGACCAGAACCTCGCGAAGAACGTCGCCGGCGATGTGATCGGAACCAGGGTGGAGGTCGCCGACGTTAAACCAACGCCGTTTCAGCCCTACTCGGAGGTTTTCGGGATTCAGAGGTTCCGCGAGTGCGAACTCATTCATGGAAGGTGGGCAATGCTGGGTGCTCTCGGTGCTTTGGTCGTTGAGGCTCTCACCGGAGTCGCGTGGCAAGACGCCGGAAAGGTAGAGCTGGTGGAAGGATCATCTTACCTGGGGCTTCCTCTTCCATTTTCATTGACCACACTGATCTGGATTGAGGTGATAGTGATAGGGTACATAGAATTTCAAAGAAATGCAGAACTTGACCCAGAGAAAAGGTTGTACCCAGGTGGCAGGTTCTTTGATCCTCTGGGTTTGGCCAACGACCCTGAAGAAAAGGCCAGACTTCAACTTGCTGAGATCAAGCATTCTCGCTTAGCCATGGTGGTCTTCCTCATCTTTGCAATTCAAGCTGCTGTAACAGGAAAAGGCCCTATCAGTTTTCTTGCTACCTTCAACAAGTGA

>Glyma18g03220.4   sequence type=CDS   gene model=Glyma18g03220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCACCACCGCCACCGCCACGTCATACTTTTTTGGCACCCGCCTCAACAACCCGACAACCTTAAACAACGGAAGATTCCACGCGCTCCTCAACTTCGGCAAAAAGAAGGCGGCGGCGCCGCCACCGAAGAAAAAGGAAGTGAAAGTGAAACCCTCCGGCGACCGGCTGGTGTGGTTTCCTAATGCGGAGCCGCCGGAGTGGCTCGACGGAAGCATGATCGGCGACCGCGGGTTCGACCCGTTCGGTTTCGCGAAGCCCGCGGAGTACCTGCAGTTCGACCTGGACTCGCTGGACCAGAACCTCGCGAAGAACGTCGCCGGCGATGTGATCGGAACCAGGGTGGAGGTCGCCGACGTTAAACCAACGCCGTTTCAGCCCTACTCGGAGGTTTTCGGGATTCAGAGGTTCCGCGAGTGCGAACTCATTCATGGAAGGTGGGCAATGCTGGGTGCTCTCGGTGCTTTGGTCGTTGAGGCTCTCACCGGAGTCGCGTGGCAAGACGCCGGAAAGGTAGAGCTGGTGGAAGGATCATCTTACCTGGGGCTTCCTCTTCCATTTTCATTGACCACACTGATCTGGATTGAGGTGATAGTGATAGGGTACATAGAATTTCAAAGAAATGCAGAACTTGACCCAGAGAAAAGGTTGTACCCAGGTGGCAGGTTCTTTGATCCTCTGGGTTTGGCCAACGACCCTGAAGAAAAGGCCAGACTTCAACTTGCTGAGATCAAGCATTCTCGCTTAGCCATGGTGGTCTTCCTCATCTTTGCAATTCAAGCTGCTGTAACAGGAAAAGGCCCTATCAGTTTTCTTGCTACCTTCAACAAGTGA

Predicted protein sequences of Glyma18g03220

Limit To All Plant Sequences

>Glyma18g03220.3   sequence type=predicted peptide   gene model=Glyma18g03220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATTATATSYFFGTRLNNPTTLNNGRFHALLNFGKKKAAAPPPKKKEVKVKPSGDRLVWFPNAEPPEWLDGSMIGDRGFDPFGFAKPAEYLQFDLDSLDQNLAKNVAGDVIGTRVEVADVKPTPFQPYSEVFGIQRFRECELIHGRWAMLGALGALVVEALTGVAWQDAGKVELVEGSSYLGLPLPFSLTTLIWIEVIVIGYIEFQRNAELDPEKRLYPGGRFFDPLGLANDPEEKARLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPISFLATFNK*

>Glyma18g03220.4   sequence type=predicted peptide   gene model=Glyma18g03220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATTATATSYFFGTRLNNPTTLNNGRFHALLNFGKKKAAAPPPKKKEVKVKPSGDRLVWFPNAEPPEWLDGSMIGDRGFDPFGFAKPAEYLQFDLDSLDQNLAKNVAGDVIGTRVEVADVKPTPFQPYSEVFGIQRFRECELIHGRWAMLGALGALVVEALTGVAWQDAGKVELVEGSSYLGLPLPFSLTTLIWIEVIVIGYIEFQRNAELDPEKRLYPGGRFFDPLGLANDPEEKARLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPISFLATFNK*

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