Glyma18g03211 - SoyBase

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Report for Sequence Feature Glyma18g03211

Feature Type:	gene_model
Chromosome:	Gm18
Start:	2124108
stop:	2129749
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g03211

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G05690	AT	Annotation by Michelle Graham. TAIR10: Cytochrome P450 superfamily protein \| chr5:1702907-1706705 REVERSE LENGTH=472	SoyBase	E_val: 0	ISS
GO:0000271	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process	SoyBase	N/A	ISS
GO:0009825	GO-bp	Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth	SoyBase	N/A	ISS
GO:0009826	GO-bp	Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth	SoyBase	N/A	ISS
GO:0009911	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development	SoyBase	N/A	ISS
GO:0009932	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell tip growth	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0010268	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid homeostasis	SoyBase	N/A	ISS
GO:0010584	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen exine formation	SoyBase	N/A	ISS
GO:0010817	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0043481	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light	SoyBase	N/A	ISS
GO:0048657	GO-bp	Annotation by Michelle Graham. GO Biological Process: tapetal cell differentiation	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016705	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	SoyBase	N/A	ISS
GO:0019825	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxygen binding	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
KOG0157	KOG	Cytochrome P450 CYP4/CYP19/CYP26 subfamilies	JGI		ISS
PTHR24286	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24286:SF58	Panther		JGI		ISS
PF00067	PFAM	Cytochrome P450	JGI		ISS
UniRef100_Q9LKH7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450 n=1 Tax=Vigna radiata RepID=Q9LKH7_VIGRA	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E42D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E42D related cluster n=1 Tax=unknown RepID=UPI000233E42D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g03211

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g03211 not represented in the dataset	Glyma18g03211 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g03211

Paralog	Evidence	Comments
Glyma11g35150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g03211 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g028300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g03211

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g03211

Limit To All Plant Sequences

>Glyma18g03211.1   sequence type=CDS   gene model=Glyma18g03211   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTTTGCCAGCTTTGCCAACACTCCTCCTCTCGTTCGCCGCCATCTTCTTCACCGTCCTCCTCCTCCTCCTCTTCCTCCGCCGCCGGCAGCTCCGCCTCCCGCCGGGGAGCTACGGCTTGCCGTTGATCGGCGAGACGCTGCAACTGATATCGGCGTACAAGAGCGACAATCCAGAGCCGTTCATCGACGAGCGCGTGGAGCGGTACGGGTCGATCTTCACGACGCACGTGTTCGGAGAGGCGACGGTGTTCTCGGCGGATCCGGAGGTGAACCGGTTCATTCTGCAGAACGAAGGGAGGCTGTTGGATTGCAGCTACCCCGGTTCGATATCGAACCTGCTGGGAAAACACTCTCTTCTGTTGATGAAAGGTGGTCTCCACAAGAGAATGCACTCTCTGACGATGAGCTTGGCCAATTCCTCCATCATCAAGGATCATCTTCTTCACCACATCGACCGCCTCGTCTGCCTCAACTTGGACGCCTGGTCCAACCGCGTCTTTCTTATGGACCAGGCAAAAAAGATAACATTTGAGCTAACGGTGAAGCAGTTGATGAGCTTTGACCCAGATGAATGGACTGAGAATCTAAGAAAAGAGTATGTTCTTGTGATTGAAGGATTCTTCACTCTCCCTTTTCCTCTCTTCTCCACCACATACCGCAGAGCCATCAAGGCAAGAACAAAGGTGGCAGAGGCACTAACGTTGGTAGTAAGGCAGAGGAGAAAAGAGTATGATGAAGACAAAGAGAAAAAGAATGACATGCTTGGGGCACTGTTGGCCTCCGGCGACCACTTTTCCGACGAGGAAATAGTGGATTTTTTGTTGGCTTTGCTCGTCGCCGGTTATGAGACCACCTCTACCATAATGACTCTTGCGATCAAGTTCCTCACTGAGACTCCCCTGGCCTTGGCACAGCTCAAGGAAGAGCATGACCAAATCAGAGCAAGAAGTGACCCAGGGACACCACTGGAATGGACCGATTACAAGTCAATGGCGTTTACTCAATGTGTTGTGAATGAGACCTTGAGAGTGGCAAACATAATTGGTGGGATTTTTAGGAGAGCAAGGACAGACATTGACATAAAAGGTTACACTATTCCTAAGGGATGGAAAGTCTTTGCATCATTTCGTGCTGTACATCTGAATCCTGAACATTACAAAGATGCCCGGTCCTTCAATCCCTGGAGATGGCAGAGTAACTCATCAGAAGCAACAAACCCTGGTAATGTTTATACACCATTTGGAGGAGGGCCACGGTTGTGCCCTGGCTATAAGCTAGCCAGAGTTGTACTTTCCGTCTTCCTTCACCGCATTGTTACCCGCTTCAGTTGGGTTCCTGCTGAGGAAGATAAGTTGGTGTTTTTCCCAACTACTAGGACGCAGAAGAGGTATCCAATTATTGTGCAGCGTAGAGACTAG

Predicted protein sequences of Glyma18g03211

Limit To All Plant Sequences

>Glyma18g03211.1   sequence type=predicted peptide   gene model=Glyma18g03211   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLPALPTLLLSFAAIFFTVLLLLLFLRRRQLRLPPGSYGLPLIGETLQLISAYKSDNPEPFIDERVERYGSIFTTHVFGEATVFSADPEVNRFILQNEGRLLDCSYPGSISNLLGKHSLLLMKGGLHKRMHSLTMSLANSSIIKDHLLHHIDRLVCLNLDAWSNRVFLMDQAKKITFELTVKQLMSFDPDEWTENLRKEYVLVIEGFFTLPFPLFSTTYRRAIKARTKVAEALTLVVRQRRKEYDEDKEKKNDMLGALLASGDHFSDEEIVDFLLALLVAGYETTSTIMTLAIKFLTETPLALAQLKEEHDQIRARSDPGTPLEWTDYKSMAFTQCVVNETLRVANIIGGIFRRARTDIDIKGYTIPKGWKVFASFRAVHLNPEHYKDARSFNPWRWQSNSSEATNPGNVYTPFGGGPRLCPGYKLARVVLSVFLHRIVTRFSWVPAEEDKLVFFPTTRTQKRYPIIVQRRD*

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