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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G05680 | AT | Annotation by Michelle Graham. TAIR10: nuclear pore complex protein-related | chr5:1698365-1702475 FORWARD LENGTH=810 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein export from nucleus | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0045087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: innate immune response | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005635 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope | SoyBase | N/A | ISS |
| GO:0005643 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear pore | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG4460 | KOG | Nuclear pore complex, Nup88/rNup84 component | JGI | ISS | |
| PTHR13257 | Panther | NUCLEOPORIN NUP84-RELATED | JGI | ISS | |
| UniRef100_I1MZ30 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MZ30_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9FFK6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nuclear pore complex protein-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9FFK6_ARATH | SoyBase | E_val: 0 | ISS |
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Glyma18g03200 not represented in the dataset |
Glyma18g03200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g35160 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g028200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g03200.2 sequence type=CDS gene model=Glyma18g03200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAATCACGTTGGAGCCGAGCTCGGAGCCGAGCCCAAGCCGCTCCCAAACTCCCAAAGAAGAACTCCAGTGGGTCCCACTTCCCAAACACCCTCTCTTCACCGCTCACGGCGGTGCCACCACCGCCGCTGATTCCCGGAACCTCCTTGCCTGGGACGGAGCCTCGCGCCTCTACTTATGGGACTCAAACAACCGCTGCCTCCACCGCCTCTCTCTCCGTCTCGGCGACCCCGATCCCTCTTCCGTCCTCGCCGCTTCTCCCTCTAAGGTGTTGCAAGCGGACGCGGTGCTTGATTTCGATGTCCGCAAAATCTCAATCAACAGGAACAGAACAGCGATACTCCTTTTCGGTTCCGAGACACTCTCTGTTATGTACCTCTACGGACGCGCCTCTAAGAAGGACGTGAACTTGATTTGCAGGACTATTACTGTTGGTTCTCAGATGTATTCCACCGGTGGCAATGATATTCGTGTGCTACAAGCATTATGGTACCCTTACAGTGATACTCATTTGGGAATCCTTTCTTCTGACTCCGTTTTCCGACTTTTCAACTTTGCCGTGGATCCTTTGCAACCTGAGCAAGAATATTATTTACAGCCTGTTGAGCCTGGTAGATCTAGAAATGCCTCATCATTGTGTCCAGTTGATTTTTCTTTTGGGGGAGACCACTTATGGGACCGGTTCAGTGTTTTTATTTTGTTTATGGGGCTTTCTATGTACTTTGCCCAGTTTCTCTTCAAATGTGAGTCTTTGGTAGAAATATTCAATGATGCTCACACATTTGGAATAATATCAATCAACTCTGTTGCGGCAAGTAATTCAAAGTTGGCCATCTCCTGGTTAGAAGCAGCTTTTCCCGAGTATACATATATTTTAAACTGGACTTTTGTCAGCTGTATTATCAATAGATGGAAAAGTGGACCTCTGCGAAGAGTAGGTCAGGGTGGGAATGAAGATTCAGTTGGTCGTAGTGCAGAATGTGAAGGTCGTGCAGTTAGTTTTCTCTACAATTTAGTCAGCAAAGACTCTATTTTGGTGACTGCCTGGAGTGGGGGGAAATTACAGATTGATGCTCTAGCCGATGAGATCCAACCTGTCTGGAGTGTTGGTAGTCCACCTCGTCTTCGTGTTGATTCCCATGACCAAATTCTTGGCCTTGCTATGATTTGTGAGTCAATTGCCAGCAGCAGTTTGTGGAAGCTTGATCATAATGCCTGGTTGGGTAATTCACCCCCTTTGCTGAGACTGGCTATTGTTGATTTGGCTCTGCCACAAAGAGCAGAAAGTGGTTATATTATTTCATTGTTCATTGATACACTTATGCCAGAAAGAATATATTCCCTTCATGACGGAAGGATTGACTCAATAGTTTTACATTTTCTTCCATTTACAAGTCAGACAAATGGCAAGGATGATACAATGAAAACACCATCTGTGCACCCTGTTCTAAATACTTGCCAGAGTGGATTCACCTCAGAACCGTCACTTTGTGGCTTTGTGTCATTATCAGATTCATTTGGATATTCATGGATTGTAGCTATTACTCTTTCTCTAGAGTGTGTTGTGCTTGAGATGAAAAGCTGGAACCTCTTGCTTCCAGTAAGCATTGATATGGAGAAGAAAACCATTTCATCAGAGGGGGAACCAAAAGAGAGAGATATACCAACAATAATTAGCAAGGAACTACTTAGAGGGACCAGGGAGGTACTTGTTCCTCAGGCCTCTCCAAGTTTACAATCTGTTGCAGCTGATTCAATTGAAGGTCGATCAACATTACATCAGTATTTCAAGCTGTTTCATGAAACCTATGTGGAGTATGCACATAAGGTGTACCTGGAGCTCAAGCATCACGCACCTCAGTTGAAGAAAATCATTAATGACCAACATTCTCGATTAGGTGATGCACAAAAGAAACTTTTGAAAATTGAGGAGCAAGAGGCTATATTACCGAAAAGGATAGATCACCATTTTAAGGAAGTTGAGTTGGATGCTTTGCATTCTTCTGTTGATGCGCTAAGTGCAAGGCTGAGAAGGCACTTGCAAGCTTCAAAAGCTAATCACCAACAACAGAAAACACCAGGGAAGAAAAGTTGTGCAGGAGATGATCAGATGTCCATGCTCAAATCATCGCTTGAAAAACTTTCACTTGTAAATACTGAAAATTCAAAGAAAGTTAAACTTGTGGAGTCTACATTGAGAAACAAAGAAAGAAGCAGCAGAGAATCAAGCCTGCCTATTCTCTAA
>Glyma18g03200.2 sequence type=predicted peptide gene model=Glyma18g03200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRITLEPSSEPSPSRSQTPKEELQWVPLPKHPLFTAHGGATTAADSRNLLAWDGASRLYLWDSNNRCLHRLSLRLGDPDPSSVLAASPSKVLQADAVLDFDVRKISINRNRTAILLFGSETLSVMYLYGRASKKDVNLICRTITVGSQMYSTGGNDIRVLQALWYPYSDTHLGILSSDSVFRLFNFAVDPLQPEQEYYLQPVEPGRSRNASSLCPVDFSFGGDHLWDRFSVFILFMGLSMYFAQFLFKCESLVEIFNDAHTFGIISINSVAASNSKLAISWLEAAFPEYTYILNWTFVSCIINRWKSGPLRRVGQGGNEDSVGRSAECEGRAVSFLYNLVSKDSILVTAWSGGKLQIDALADEIQPVWSVGSPPRLRVDSHDQILGLAMICESIASSSLWKLDHNAWLGNSPPLLRLAIVDLALPQRAESGYIISLFIDTLMPERIYSLHDGRIDSIVLHFLPFTSQTNGKDDTMKTPSVHPVLNTCQSGFTSEPSLCGFVSLSDSFGYSWIVAITLSLECVVLEMKSWNLLLPVSIDMEKKTISSEGEPKERDIPTIISKELLRGTREVLVPQASPSLQSVAADSIEGRSTLHQYFKLFHETYVEYAHKVYLELKHHAPQLKKIINDQHSRLGDAQKKLLKIEEQEAILPKRIDHHFKEVELDALHSSVDALSARLRRHLQASKANHQQQKTPGKKSCAGDDQMSMLKSSLEKLSLVNTENSKKVKLVESTLRNKERSSRESSLPIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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