SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma18g03151): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma18g03151): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma18g03151

Feature Type:gene_model
Chromosome:Gm18
Start:2072174
stop:2073366
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g03151
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G19610AT Annotation by Michelle Graham. TAIR10: Arabidopsis defensin-like protein | chr1:6781674-6782024 REVERSE LENGTH=78 SoyBaseE_val: 7.00E-13ISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF00304PFAM Gamma-thionin family JGI ISS
UniRef100_B9R7X8UniRef Annotation by Michelle Graham. Best UniRef hit: Low-molecular-weight cysteine-rich protein LCR78, putative n=1 Tax=Ricinus communis RepID=B9R7X8_RICCO SoyBaseE_val: 1.00E-13ISS
UniRef100_B9R7X8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Low-molecular-weight cysteine-rich protein LCR78, putative n=1 Tax=Ricinus communis RepID=B9R7X8_RICCO SoyBaseE_val: 1.00E-13ISS

Expression Patterns of Glyma18g03151
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g03151 not represented in the dataset
Glyma18g03151 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g03151 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g027700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g03151
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g03151
>Glyma18g03151.1   sequence type=CDS   gene model=Glyma18g03151   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGAACATGGGGAGGGTGGTGTGACAACTCTAACCACTGTGACAACCAATGCAAGAACATGGGACTCACGCGGAAGGGCTTGTTTCTGCTACTTCAGTTGTCCAGGCTTATGTGCTAAGCGCAGCAAGACATGGTCTGGTTGGTGTGGCAGCTCCAACAACTGTGACAAGCAATGCAGGACTAAGGAAGGTGCAACTCATGGAGCCTGTCACGGTAACATTTTGAAACGGGCTTGTGACTGTTACTTCAAATGTTAA
Predicted protein sequences of Glyma18g03151
>Glyma18g03151.1   sequence type=predicted peptide   gene model=Glyma18g03151   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPEHGEGGVTTLTTVTTNARTWDSRGRACFCYFSCPGLCAKRSKTWSGWCGSSNNCDKQCRTKEGATHGACHGNILKRACDCYFKC*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo